Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04670 ATGAGGAAGAGTGTAAGTTTGAAAGCTGGAGAGGTTTCGACTCGACTGACTCGTGCTCGAGCTGCTGCTTTAAGTGCAACTGGACAGTTGCCACCATTGAAGGAGATTTCACAAGAAAATCAGAAGCATCCCCTAGTAACCAATTCAAAAAGAGCAGTTTCAGATGTTACATATCTTCCTCATAAGAAGAGGGGAATTCTTCAGGATGTTACTAACATTTGCTGTGAAGTTCAGGCTAAGAAACGCAAGCTGGCTAAGCCTGCTCAACCACCAGTTGCTATAGAGATACCGCAATTTGTAGCTGACTCAAAACCGCTGAGTTCAACGGAAATGCGGCTTAGATCATCAGAAGATATCATGTGCTTAGTTAGTTCAGAACACAATGCACTTGTTAGGCTTAGTACCGACCAATGTGGCACAAATAATAACCGGTTTCACAGTCAGACTTCTCGAATATCTGCTCGGCCTTTGATTTCTCAAAAGAAAGCCAAGAAAGGCAACTATTCTGAACTTCTAGATGTGTCGAAGCATCCGGATGTTGTTGACATAGACGCTGATTTTGAAGATCCTCAACTTTGTAGCCTCTATGCTGCTGATATATATGACCACTTTCGTGTTGCTGAGCTGTCGAGAAGGCCTTGTCCTAACTTCATGGAAACAGTACAACAAGATATCACTCCAAGCATGCGTGCAATACTCATTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCGCTGTATATCTCATCGATTGGTTTCTCTCCAAAAATCACATTGAGAGACAGAGGCTTCAGCTACTTGGCATCACTTGCATGCTAATTGCTTCGAAGTACGAAGAAATTAACGCCCCTCGTGTTGAAGACTTCTGCTTCATCACAGAGAACACATACACAAAAGAGGAGGTATTGAAAATGGAGTCTCTAGTGTTGAAGTCCTCTGCATATCAACTATTTGCTCCCACTACAAAAACTTTCTTGAGGAGGTTTCTTCGAGCGGCACAAGCTTCTTACAAGAGACCTAGCATTGAATTGGAGTACTTGGCAAATTACCTGGCAGAACTAACACTGATGAACTATGGTTTCTTAAATTTCCTTCCTTCTATGATTGCCGCATCTGCCGTATTTCTCGCCAGATGGACGTTAGACCCATCAAACCATCCATGGAATCCAACTCTTGAGCATTATGCCTCTTACAAAGCACCAGATTTGAAAGCCACAGTTCTTGCATTACAAGATCTGCAGCTGAATAACAATGACTGTCCTTTAACTGCGATCCGCATGAAGTATTCACAAGACAAGCTCAAATGTGTAGCAGCTTTATCTTCAACAAAACTACTTGAAGCAATGTTCTGA 1377 0.4227 MRKSVSLKAGEVSTRLTRARAAALSATGQLPPLKEISQENQKHPLVTNSKRAVSDVTYLPHKKRGILQDVTNICCEVQAKKRKLAKPAQPPVAIEIPQFVADSKPLSSTEMRLRSSEDIMCLVSSEHNALVRLSTDQCGTNNNRFHSQTSRISARPLISQKKAKKGNYSELLDVSKHPDVVDIDADFEDPQLCSLYAADIYDHFRVAELSRRPCPNFMETVQQDITPSMRAILIDWLVEVSEGYKLQANTLYLAVYLIDWFLSKNHIERQRLQLLGITCMLIASKYEEINAPRVEDFCFITENTYTKEEVLKMESLVLKSSAYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDPSNHPWNPTLEHYASYKAPDLKATVLALQDLQLNNNDCPLTAIRMKYSQDKLKCVAALSSTKLLEAMF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04670 458 PIRSF Cyclin_A_B_D_E 3 457 IPR046965 GO:0016538|GO:0044772
Trre12g04670 458 Pfam Cyclin, C-terminal domain 328 450 IPR004367 -
Trre12g04670 458 Pfam Cyclin, N-terminal domain 199 320 IPR006671 -
Trre12g04670 458 SMART Cyclin_C_2 328 451 IPR004367 -
Trre12g04670 458 Gene3D - 199 447 - -
Trre12g04670 458 FunFam Mitotic cyclin 6 213 313 - -
Trre12g04670 458 FunFam Cyclin A1 315 447 - -
Trre12g04670 458 PANTHER CYCLINS 149 443 IPR039361 -
Trre12g04670 458 SMART cyclin_7 332 420 IPR013763 -
Trre12g04670 458 SMART cyclin_7 235 319 IPR013763 -
Trre12g04670 458 CDD CYCLIN_AtCycA-like_rpt2 328 441 - -
Trre12g04670 458 Gene3D - 213 326 - -
Trre12g04670 458 SUPERFAMILY Cyclin-like 328 451 IPR036915 -
Trre12g04670 458 SUPERFAMILY Cyclin-like 188 320 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04670 Trre-Chr12 60601196 60604376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04670 8 458 Core Cell Cycle Gene Families AT1G15570 50.985 2.25e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04670 K06627 - gmx:100793657 575.089