Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04666 ATGCCTTATAAGAAGAGGGGAATTCTTCAGGATGTTACTAACATTTGCTGTGAAGTTCAGGCTAAGAAACGCAAGCTGGCTAAGCCTGCTCAACCACCAGTTGCTATAGAGATACCGCAATTTGTAGCTGACTCAAAACCGCTGAGTTCAACGGAAATGCGGCTTAGATCATCAGAAGATATCATGTGCTTAGTTAGTTCAGAACACAATGCACTTGTTAGGCTTAGTACCGACCAATGTGGCACAAATAATAACCGGTTTCACAGTCAGACTTCTCGAATATCTGCTCGGCCTTTGATTTCTCAAAAGAAAGCTTCACAAATGTTTGCAGCCAAGAAAGGCAACTATTCTGAACTTCTAGATGTGTCGAAGCATCCGGATGTTGTTGACATAGACGCTGATTTTGAAGATCCTCAACTTTGTAGCCTCTATGCTGCTGATATATATGACCACTTTCGTGTTGCTGAGCTGTCGAGAAGGCCTTGTCCTAACTTCATGGAAACAGTACAACAAGATATCACTCCAAGCATGCGTGCAATACTCATTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCGCTGTATATCTCATCGATTGGTTTCTCTCCAAAAATCACATTGAGAGACAGAGGCTTCAGCTACTTGGCATCACTTGCATGCTAATTGCTTCGAAGTACGAAGAAATTAACGCCCCTCGTGTTGAAGACTTCTGCTTCATCACAGAGAACACATACACAAAAGAGGAGGTATTGAAAATGGAGTCTCTAGTGTTGAAGTCCTCTGCATATCAACTATTTGCTCCCACTACAAAAACTTTCTTGAGGAGGTTTCTTCGAGCGGCACAAGCTTCTTACAAGAGACCTAGCATTGAATTGGAGTACTTGGCAAATTACCTGGCAGAACTAACACTGATGAACTATGGTTTCTTAAATTTCCTTCCTTCTATGATTGCCGCATCTGCCGTATTTCTCGCCAGATGGACGTTAGACCCATCAAACCATCCATGGAATCCAACTCTTGAGCATTATGCCTCTTACAAAGCACCAGATTTGAAAGCCACAGTTCTTGCATTACAAGATCTGCAGCTGAATAACAATGACTGTCCTTTAACTGCGATCCGCATGAAGTATTCACAAGACAAGCTCAAATGTGTAGCAGCTTTATCTTCAACAAAACTACTTGAAGCAATGTTCTGA 1221 0.4201 MPYKKRGILQDVTNICCEVQAKKRKLAKPAQPPVAIEIPQFVADSKPLSSTEMRLRSSEDIMCLVSSEHNALVRLSTDQCGTNNNRFHSQTSRISARPLISQKKASQMFAAKKGNYSELLDVSKHPDVVDIDADFEDPQLCSLYAADIYDHFRVAELSRRPCPNFMETVQQDITPSMRAILIDWLVEVSEGYKLQANTLYLAVYLIDWFLSKNHIERQRLQLLGITCMLIASKYEEINAPRVEDFCFITENTYTKEEVLKMESLVLKSSAYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDPSNHPWNPTLEHYASYKAPDLKATVLALQDLQLNNNDCPLTAIRMKYSQDKLKCVAALSSTKLLEAMF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04666 406 CDD CYCLIN_AtCycA-like_rpt2 276 389 - -
Trre12g04666 406 Gene3D - 147 395 - -
Trre12g04666 406 FunFam Mitotic cyclin 6 161 261 - -
Trre12g04666 406 FunFam Cyclin A1 263 395 - -
Trre12g04666 406 SMART cyclin_7 280 368 IPR013763 -
Trre12g04666 406 SMART cyclin_7 183 267 IPR013763 -
Trre12g04666 406 SUPERFAMILY Cyclin-like 136 268 IPR036915 -
Trre12g04666 406 PANTHER CYCLINS 101 391 IPR039361 -
Trre12g04666 406 Pfam Cyclin, N-terminal domain 147 268 IPR006671 -
Trre12g04666 406 Gene3D - 161 274 - -
Trre12g04666 406 SUPERFAMILY Cyclin-like 276 399 IPR036915 -
Trre12g04666 406 Pfam Cyclin, C-terminal domain 276 398 IPR004367 -
Trre12g04666 406 SMART Cyclin_C_2 276 399 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04666 Trre-Chr12 60585884 60588890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04666 4 406 Core Cell Cycle Gene Families AT1G15570 54.034 4.23e-150 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04666 K06627 - gmx:100793657 518.85