Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04665 ATGCCTTATAAGAAGAGGGGAATTCTTCAGGATGTTACTAACATTTGCTGTGAAGTTCAGGCTAAGAAACGCAAGCTGGCTAAGCCTGCTCAACCACCAGTTGCTATAGAGATACCGCAATTTGTAGCTGACTCAAAACCGCTGAGTTCAACGGAAATGCGGCTTAGATCATCAGAAGATATCATGTGCTTAGTTAGTTCAGAACACAATGCACTTGTTAGGCTTAGTACCGACCAATGTGGCACAAATAATAACCGGTTTCACAGTCAGACTTCTCGAATATCTGCTCGGCCTTTGATTTCTCAAAAGAAAGCCAAGAAAGGCAACTATTCTGAACTTCTAGATGTGTCGAAGCATCCGGATGTTGTTGACATAGACGCTGATTTTGAAGATCCTCAACTTTGTAGCCTCTATGCTGCTGATATATATGACCACTTTCGTGTTGCTGAGCTGTCGAGAAGGCCTTGTCCTAACTTCATGGAAACAGTACAACAAGATATCACTCCAAGCATGCGTGCAATACTCATTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCGCTGTATATCTCATCGATTGGTTTCTCTCCAAAAATCACATTGAGAGACAGAGGCTTCAGCTACTTGGCATCACTTGCATGCTAATTGCTTCGAAGTACGAAGAAATTAACGCCCCTCGTGTTGAAGACTTCTGCTTCATCACAGAGAACACATACACAAAAGAGGAGGTATTGAAAATGGAGTCTCTAGTGTTGAAGTCCTCTGCATATCAACTATTTGCTCCCACTACAAAAACTTTCTTGAGGAGGTTTCTTCGAGCGGCACAAGCTTCTTACAAGAGACCTAGCATTGAATTGGAGTACTTGGCAAATTACCTGGCAGAACTAACACTGATGAACTATGGTTTCTTAAATTTCCTTCCTTCTATGATTGCCGCATCTGCCGTATTTCTCGCCAGATGGACGTTAGACCCATCAAACCATCCATGGAATCCAACTCTTGAGCATTATGCCTCTTACAAAGCACCAGATTTGAAAGCCACAGTTCTTGCATTACAAGATCTGCAGCTGAATAACAATGACTGTCCTTTAACTGCGATCCGCATGAAGTATTCACAAGACAAGCTCAAATGTGTAGCAGCTTTATCTTCAACAAAACTACTTGAAGCAATGTTCTGA 1203 0.4206 MPYKKRGILQDVTNICCEVQAKKRKLAKPAQPPVAIEIPQFVADSKPLSSTEMRLRSSEDIMCLVSSEHNALVRLSTDQCGTNNNRFHSQTSRISARPLISQKKAKKGNYSELLDVSKHPDVVDIDADFEDPQLCSLYAADIYDHFRVAELSRRPCPNFMETVQQDITPSMRAILIDWLVEVSEGYKLQANTLYLAVYLIDWFLSKNHIERQRLQLLGITCMLIASKYEEINAPRVEDFCFITENTYTKEEVLKMESLVLKSSAYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDPSNHPWNPTLEHYASYKAPDLKATVLALQDLQLNNNDCPLTAIRMKYSQDKLKCVAALSSTKLLEAMF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04665 400 CDD CYCLIN_AtCycA-like_rpt2 270 383 - -
Trre12g04665 400 Pfam Cyclin, C-terminal domain 270 392 IPR004367 -
Trre12g04665 400 Pfam Cyclin, N-terminal domain 141 262 IPR006671 -
Trre12g04665 400 SMART cyclin_7 177 261 IPR013763 -
Trre12g04665 400 SMART cyclin_7 274 362 IPR013763 -
Trre12g04665 400 FunFam Mitotic cyclin 6 155 255 - -
Trre12g04665 400 SUPERFAMILY Cyclin-like 130 262 IPR036915 -
Trre12g04665 400 Gene3D - 155 268 - -
Trre12g04665 400 SMART Cyclin_C_2 270 393 IPR004367 -
Trre12g04665 400 SUPERFAMILY Cyclin-like 270 393 IPR036915 -
Trre12g04665 400 FunFam Cyclin A1 257 389 - -
Trre12g04665 400 PANTHER CYCLINS 93 385 IPR039361 -
Trre12g04665 400 PIRSF Cyclin_A_B_D_E 4 399 IPR046965 GO:0016538|GO:0044772
Trre12g04665 400 Gene3D - 141 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04665 Trre-Chr12 60585884 60588890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04665 4 400 Core Cell Cycle Gene Families AT1G15570 54.839 1.99e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04665 K06627 - gmx:100793657 525.398