Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04661 ATGGATGCTACTTCTTTGGATTCAAATAGCAACATCCAAACCGAACAACATCCTTTGCTGATGGAGCATCCAGAGAGTGGTAATGGACATCACCACATAATTGATGTTACAAGGAATGATGAAACTTTGTCTACATCATCTCATAATGGCCAACACTTGGAAACACATTTACCGGTGATTGATAATCAACCAGTTGAGGGTACTGATGACTCCACTCATCAAACATTTTCATCTTCTGCATCTAGATTAGACTCTACATATTCCGCTCCATTGAGAAGTCGTGAGGGGTTTGGTCGTCGCAGAACGAACCCATTGAACTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTTACTGTGATTCAAATCATAGCATCTATTGTGGTTTTGTTGTTGTCAAGAAACGAAAAACCCCAAGCGCCACTGTTTGTGTGGGTTGTAGGTTATGCATCTGGGTGTATTGCCACACTTCCTATTCTTCATTGGCGTTTTCGAAACCGTAATCAAAGAACTGAACAACATACCTCTCAGCCATCTCAAGAAACTTCTGGAAGTAATCGTCTAGATCATTCTGAAACCACCATCTATGTTTCTCATGTTTCGGATGAGGAGAATGGTCATGCTACACAATCAGCTACAGGAAACACTATAATTCCTAGTGTCTTTACTTCTAGTCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAATTGTTTGGATCTTTGGAGGTAACACCTCTTCTTCTGAGGCTCCACAATTATACAGGTTATGTATTGTGTTTCTTACTTTTAGCTGTATTGGATATGTTATGCCATTTATACTTTGTGCAACTATATGTTGCTGCCTACCCTGCATAATTTCTGCTTTGGATATTCGGGAGGATTTATCTCAAAATAGAGGAGCAACAGTAGAATCGATCAATTCTCTACCAGTCTACAAGTTCAAAGTGAAGAACAATGAAAATTGTGTTGATCAGTATACCAACACAGCTTTAGAAGAATGTGGGGTTTTGGCTGCAGGGACAGAAAAAGAGCGAATACTCTCAGGAAAAGATGCTATAATGATGAACTTAGAGAACTACCTTGCTCGCACGTATTTCACGTTCGATGTGTTGACAAATGGTTAA 1158 0.3972 MDATSLDSNSNIQTEQHPLLMEHPESGNGHHHIIDVTRNDETLSTSSHNGQHLETHLPVIDNQPVEGTDDSTHQTFSSSASRLDSTYSAPLRSREGFGRRRTNPLNSGLWISVELVVTVIQIIASIVVLLLSRNEKPQAPLFVWVVGYASGCIATLPILHWRFRNRNQRTEQHTSQPSQETSGSNRLDHSETTIYVSHVSDEENGHATQSATGNTIIPSVFTSSLNGLVDHFKMALDCFFAVWFVVGIVWIFGGNTSSSEAPQLYRLCIVFLTFSCIGYVMPFILCATICCCLPCIISALDIREDLSQNRGATVESINSLPVYKFKVKNNENCVDQYTNTALEECGVLAAGTEKERILSGKDAIMMNLENYLARTYFTFDVLTNG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04661 385 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 365 - -
Trre12g04661 385 MobiDBLite consensus disorder prediction 67 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04661 Trre-Chr12 60570318 60572183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04661 1 363 C3H Transcription Factor Family AT1G80400 50.400 2.12e-118 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04661 - - gmx:100819516 551.592