Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04651 ATGAAAATCCAAACTGAGATTCCAATTCATCAAGTTCGTTTACCACCACAAAGAACATCACTCAAAAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATGTTTCACCAAGTTTCTTCTTACCCTTCAATTCTTCTTCCCCATTTTCCAATGGGGTTCTCACTATAATCTCACCCTTCTCCGTTCTGATATCATCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATTAGTTATGCAAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCGAGTTTTGTGCCTCCATTGATATATGCACTGCTTGGAAGTTCAAAACATCTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAGACTGTTTCTTTCACTCAAAATCCAACTCTTTATCTTCAATTGGCTTTCACTGCAACTTTTGTTGCTGGTTTATTCCAAGCTTCTCTTGGTATATTAAGGTTAGGATTTGTAATTGATTTTCTATCAAAGGCAACACTGGTCGGTTTCATGGCCGGTGCAGCTATCATCGTGTCACTACAACAATTGAAAGGGTTACTTGGAATTGTTCACTTTACTAACAAGATGCAAATAATTCCTGTATTGCTATCTGTTTATAAGCAAAAAGATGAGTGGTCATGGCAAACTGTTGTTATGGGACTCGGCTTCTTGGCGTTCCTGCTTACAACAAGACACATTAGTTTGAGAAAACCGAAATTATTCTGGGCTTCGGCAGCTGCTCCTTTAACATCAGTCATTTTGTCAACCGTTTTAGTCTTTCTTCTTAGAAATAAGGCTCATCACATTTCAATTATTGGGCACTTATCAAAGGGAGTTAATCCACCATCAGTAAACCTGTTATACTTCAATGGTCCTCACTTGGCTCTTGCTATCAAAACAGGCATTGTCACTGGCATCCTATCTCTCACGGAAGGAATTGCGGTAGGTAGAACATTTGCAGCACTTAAGAACTACCAAGTCGATGGAAACAAAGAAATGATGGCTATCGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGATCCTTTTCTCGATCGGCTGTTAATTACAATGCTGGAGCACAGACAGCAGTTTCTAACATAATCATGGCATCAGCTGTTCTAGTGACCCTTTTGTTTCTAATGCCTCTCTTCTACTATACGCCAACCGTTGTCTTAGCAACCATCATCATCGCTGCCGTGATTGGACTAATAGATTATCAAGCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTCTTCATTTCTGTACCTTTAGGCCTCAGTATAGCGGTTGCCATATCAGTCTTAAAGATCCTACTTCATGTCTCTAGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACACAAATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTGCCTTCGTTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAATTCGACTTACCTTCGAGAGAGGATACTAAGATGGATTCGAGAAGAGGAAGAACGTATAAAAGCAAATAATGGAAATGAATTGAAGTGCATAATTTTAGACATGACAGCTGTCACGGCAATAGACACAAGTGGTCTTGAAACTTTAGGTGAACTTAGAAAGGTGCTAGAACAAAGATCACTTCAGCTTGTGCTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATACGTCGAAAATTTTGGATACCTTTGGATTTAAAGGAGTCTATCTCACAGTAGGAGAAGCTGTGGCTGACATTTCCTCAGCCAATAAAGCTCAACCATGA 1905 0.3984 MKIQTEIPIHQVRLPPQRTSLKKLKHRLSEIFFPDDPLHRFKNQPCFTKFLLTLQFFFPIFQWGSHYNLTLLRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSKHLGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLLSVYKQKDEWSWQTVVMGLGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTVLVFLLRNKAHHISIIGHLSKGVNPPSVNLLYFNGPHLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPTVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFISVPLGLSIAVAISVLKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWIREEEERIKANNGNELKCIILDMTAVTAIDTSGLETLGELRKVLEQRSLQLVLVNPVGNVMEKLHTSKILDTFGFKGVYLTVGEAVADISSANKAQP 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04651 634 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Trre12g04651 634 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Trre12g04651 634 Pfam STAS domain 504 622 IPR002645 -
Trre12g04651 634 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020|GO:0055085
Trre12g04651 634 SUPERFAMILY SpoIIaa-like 509 625 IPR036513 -
Trre12g04651 634 FunFam Sulfate transporter 31 483 629 - -
Trre12g04651 634 Pfam Sulfate permease family 72 452 IPR011547 GO:0016020
Trre12g04651 634 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Trre12g04651 634 Gene3D STAS domain 483 629 IPR036513 -
Trre12g04651 634 PANTHER SULFATE TRANSPORTER 21 626 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04651 Trre-Chr12 60437906 60447840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04651 4 634 Inorganic Solute Cotransporters AT3G15990 76.777 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04651 K17471 - gmx:100780331 1053.89