Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04650 ATGAACTGCAACAGAGTAGAACACTTTGAAGAATCAACCATGAAAATCCAAACTGAGATTCCAATTCATCAAGTTCGTTTACCACCACAAAGAACATCACTCAAAAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATGTTTCACCAAGTTTCTTCTTACCCTTCAATTCTTCTTCCCCATTTTCCAATGGGGTTCTCACTATAATCTCACCCTTCTCCGTTCTGATATCATCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATTAGTTATGCAAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCGAGTTTTGTGCCTCCATTGATATATGCACTGCTTGGAAGTTCAAAACATCTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAGACTGTTTCTTTCACTCAAAATCCAACTCTTTATCTTCAATTGGCTTTCACTGCAACTTTTGTTGCTGGTTTATTCCAAGCTTCTCTTGGTATATTAAGGTTAGGATTTGTAATTGATTTTCTATCAAAGGCAACACTGGTCGGTTTCATGGCCGGTGCAGCTATCATCGTGTCACTACAACAATTGAAAGGGTTACTTGGAATTGTTCACTTTACTAACAAGATGCAAATAATTCCTGTATTGCTATCTGTTTATAAGCAAAAAGATGAGTGGTCATGGCAAACTGTTGTTATGGGACTCGGCTTCTTGGCGTTCCTGCTTACAACAAGACACATTAGTTTGAGAAAACCGAAATTATTCTGGGCTTCGGCAGCTGCTCCTTTAACATCAGTCATTTTGTCAACCGTTTTAGTCTTTCTTCTTAGAAATAAGGCTCATCACATTTCAATTATTGGGCACTTATCAAAGGGAGTTAATCCACCATCAGTAAACCTGTTATACTTCAATGGTCCTCACTTGGCTCTTGCTATCAAAACAGGCATTGTCACTGGCATCCTATCTCTCACGGAAGGAATTGCGGTAGGTAGAACATTTGCAGCACTTAAGAACTACCAAGTCGATGGAAACAAAGAAATGATGGCTATCGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGATCCTTTTCTCGATCGGCTGTTAATTACAATGCTGGAGCACAGACAGCAGTTTCTAACATAATCATGGCATCAGCTGTTCTAGTGACCCTTTTGTTTCTAATGCCTCTCTTCTACTATACGCCAACCGTTGTCTTAGCAACCATCATCATCGCTGCCGTGATTGGACTAATAGATTATCAAGCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTCTTCATTTCTGTACCTTTAGGCCTCAGTATAGCGGTTGCCATATCAGTCTTAAAGATCCTACTTCATGTCTCTAGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACACAAATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTGCCTTCGTTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAATTCGACTTACCTTCGAGAGAGGATACTAAGATGGATTCGAGAAGAGGAAGAACGTATAAAAGCAAATAATGGAAATGAATTGAAGTGCATAATTTTAGACATGACAGCTGTCACGGCAATAGACACAAGTGGTCTTGAAACTTTAGGTGAACTTAGAAAGGTGCTAGAACAAAGATCACTTCAGCTTGTGCTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATACGTCGAAAATTTTGGATACCTTTGGATTTAAAGGAGTCTATCTCACAGTAGGAGAAGCTGTGGCTGACATTTCCTCAGCCAATAAAGCTCAACCATGA 1944 0.3981 MNCNRVEHFEESTMKIQTEIPIHQVRLPPQRTSLKKLKHRLSEIFFPDDPLHRFKNQPCFTKFLLTLQFFFPIFQWGSHYNLTLLRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSKHLGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLLSVYKQKDEWSWQTVVMGLGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTVLVFLLRNKAHHISIIGHLSKGVNPPSVNLLYFNGPHLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPTVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFISVPLGLSIAVAISVLKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWIREEEERIKANNGNELKCIILDMTAVTAIDTSGLETLGELRKVLEQRSLQLVLVNPVGNVMEKLHTSKILDTFGFKGVYLTVGEAVADISSANKAQP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04650 647 Pfam Sulfate permease family 85 465 IPR011547 GO:0016020
Trre12g04650 647 FunFam Sulfate transporter 31 496 642 - -
Trre12g04650 647 CDD STAS_SulP_like_sulfate_transporter 517 632 - -
Trre12g04650 647 Gene3D STAS domain 496 642 IPR036513 -
Trre12g04650 647 ProSiteProfiles STAS domain profile. 516 639 IPR002645 -
Trre12g04650 647 PANTHER SULFATE TRANSPORTER 34 639 IPR001902 GO:0016020|GO:0055085
Trre12g04650 647 Pfam STAS domain 517 635 IPR002645 -
Trre12g04650 647 NCBIfam sulfate permease 72 635 IPR001902 GO:0016020|GO:0055085
Trre12g04650 647 ProSitePatterns SLC26A transporters signature. 114 135 IPR018045 GO:0008271|GO:0008272
Trre12g04650 647 SUPERFAMILY SpoIIaa-like 522 638 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04650 Trre-Chr12 60437906 60447879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04650 4 647 Inorganic Solute Cotransporters AT3G15990 75.617 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04650 K17471 - gmx:100812617 1060.83