Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04646 ATGGATGACATTGAGGATGATGCAATTGGAAGTTATCCCCCAAACCCTAACAATCAAGGATATGGTTATATGAAACATCCTTTGAGGAATTCTTCATATTCTCATCCGGTTGCGAATGAATCTGCCCGAGATTATAATGATGTTGTTGCTGTTGATGATGATGACGATGATGATGTTGTTGTTGAAGATGAAGACCGGTTAGGAGGGGAAGATGATATTGTTGACGTTGTTGATGATGATGATGATGTTGATCGAAATAGGAGTGTTCAAAATTCCTTGAACCGGGTTGATGAAGATGGTGACATGGATGGGGATGGTGATGAGGATGAAAATGATGATAACAATAGTGATGATAATGACCAACAACAGAATGAGGAATACGGTTATGCGAAACATCCTGTGAGGAATTCTCCATATTCTCAGTCATTTGCAAATGAAGGTAACAATGATGAGGATGAAGAAGATGAAGAGCAGTTAGTGGAGGAAGATGATGGGGGTGGTGATGATGATGTTGATCAAATTAACAATGTTCAGCTTTCTGTAAAGCAAGTTGATGAAGAAGATAACTATGATGAAGATGGGGATAGGGATGAAATTGACGATGACAACGACAACGACGGTGATAATGACGATAAGCAGAAAGGTTATGCCATTATGAATAATGAAGATGAATTTGAGTGGCACCCAAAAAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAATTTGCAGCTCGGGTGCCTACACCATCAGCTGTAGCTACTTCAGCTACTAAACCGTCTTTTGGGGTTAGAAATTCCCTTACTGAGTGGACTGAGAAGGAGACATTTGTTCTTCTTGATGCGTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCTGATGAATGGCAAAAAGTTGCAGAAAAGGTATCAGAAGTTTCAAGAGTTGAAAGAACAGGTACTCAGTGTAGAAATCGGTTAGATACATTGAAGAAAAAGTACAAAAAGGACAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAGAAAATGGGTTTATTTTAAAAAGATGGATAAGCTAATGTCTTCTCCACCACAACAGGCAGGTTTCTCTTGTGGTTTGGATTCAAGAGAGAGTGCTTTCATGAAGCCCAAAGTTCATGTAAATCATGCAAATGGGTTGGATGACATGAAAGATAGTCCTGAGAATACTGAATCCGTCGGTGTAGAAAGTTCAAATGGACCTCGCGCAAAGAAAAGAAGGAAGGGAAGGAGCGGTGGTGAGGATTCTTCCTTTAAATTACTTGCTGATTCCATTCAGAATTTTGGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGAAGATGCTGGAACTGGAAAAGATGAGGATGGATTTCCTCAATGATTTGGAAACACAAAAGAGACAGATTTTTGAAAAATTGCAGAGTGAGATTTTGAAACTAGAGCAAAGAGATGATTAG 1476 0.3902 MDDIEDDAIGSYPPNPNNQGYGYMKHPLRNSSYSHPVANESARDYNDVVAVDDDDDDDVVVEDEDRLGGEDDIVDVVDDDDDVDRNRSVQNSLNRVDEDGDMDGDGDEDENDDNNSDDNDQQQNEEYGYAKHPVRNSPYSQSFANEGNNDEDEEDEEQLVEEDDGGGDDDVDQINNVQLSVKQVDEEDNYDEDGDRDEIDDDNDNDGDNDDKQKGYAIMNNEDEFEWHPKKQKLKSLISTYEFAARVPTPSAVATSATKPSFGVRNSLTEWTEKETFVLLDAWGDRFLQHGRKSLRSDEWQKVAEKVSEVSRVERTGTQCRNRLDTLKKKYKKDKIKFSEMGGGDRKWVYFKKMDKLMSSPPQQAGFSCGLDSRESAFMKPKVHVNHANGLDDMKDSPENTESVGVESSNGPRAKKRRKGRSGGEDSSFKLLADSIQNFGKIYEKIENSKRQKMLELEKMRMDFLNDLETQKRQIFEKLQSEILKLEQRDD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04646 491 Coils Coil 443 463 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 388 427 - -
Trre12g04646 491 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 259 489 IPR044823 -
Trre12g04646 491 ProSiteProfiles Myb-like domain profile. 271 328 IPR001005 -
Trre12g04646 491 MobiDBLite consensus disorder prediction 186 207 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 100 120 - -
Trre12g04646 491 Gene3D - 271 333 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 49 79 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 147 170 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 208 222 - -
Trre12g04646 491 Pfam Myb/SANT-like DNA-binding domain 270 357 IPR044822 -
Trre12g04646 491 MobiDBLite consensus disorder prediction 1 222 - -
Trre12g04646 491 MobiDBLite consensus disorder prediction 80 99 - -
Trre12g04646 491 FunFam trihelix transcription factor ASIL2 271 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04646 Trre-Chr12 60418295 60419770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04646 424 489 Trihelix Transcription Factor Family AT3G14180 43.939 1.82e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre12g04646 Myb_DNA-bind_4 9.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04646 - - psat:127087507 570.081