Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04642 ATGCCTAAGAAGCTTCAAAAAACCCTTCAAGATTACCTCAACAAAATCAAAAACAAAAAACCTCATCCTCAAATTACACTAACAAAAATGCTCTCTGGTTGCAAACATCCCAAAACGCCATCGTTTTCTTTAGATAACGGCAGAAACACATCATCATCTAACGCCGTTAACAACAAAATCAACGATGCAGCAACACTAGCTGACGTTGACCGTTTTCTTTTTGAGAATTTTAAGTCTCTTTATTTCAAAGATGATGAAGAAACTGAAAACAACAACAATACCAACAACAACAATAACAATAACAAAAGAATCTCGGATGGACATAACAACCAGGAACAGCTGAAACTTGGTTCCTGGTTGTTTGAATCACCGAGATTCATTTCAACACCACCACAAGATCTTTGTGGATCAACACGATTTTTCGTGAAACCGGGAAATTCAGGATCATTGATGGAAGATGTACTATCTTTATCAAACAGTGATGAAGCTGATTCGAGTAATTCGAATTCATCATCAACTGCATCACCTACAAAAGAGGTTATTATGGTTAATCATAATCATGATCATGATCATAATAATGCTCTTCCTGATAACTGTATTGCTTTGTTATCGTATTCGCCTAGTCCTTACGATGATTTTAGGCGATCCATGCAAGAATTGGTCGAATCGAAGTATGGTAAACTCGAAAACAATCATAGAAAAATTGATTGGGATTTCATGGAGGAGATTTTGTTTTGTTACCTTAATCTTAATGAGAAAAAGTCTCATAAGTTTATTTTAAGTGCTTTTGTTGATCTCATCACTGTTATGCGTCGGAATTCAGAGGCAGCTCCGGGGAAACCGTGTAGCGTCCGAACCGTTAGGATTGATAGGGAAGTCAGGAAGAAGAAGACCAAGCAAGTTACCATAGAATTTGAGTCTTAA 924 0.368 MPKKLQKTLQDYLNKIKNKKPHPQITLTKMLSGCKHPKTPSFSLDNGRNTSSSNAVNNKINDAATLADVDRFLFENFKSLYFKDDEETENNNNTNNNNNNNKRISDGHNNQEQLKLGSWLFESPRFISTPPQDLCGSTRFFVKPGNSGSLMEDVLSLSNSDEADSSNSNSSSTASPTKEVIMVNHNHDHDHNNALPDNCIALLSYSPSPYDDFRRSMQELVESKYGKLENNHRKIDWDFMEEILFCYLNLNEKKSHKFILSAFVDLITVMRRNSEAAPGKPCSVRTVRIDREVRKKKTKQVTIEFES 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04642 307 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 57 270 IPR038933 GO:0045892
Trre12g04642 307 MobiDBLite consensus disorder prediction 37 56 - -
Trre12g04642 307 ProSiteProfiles OVATE domain profile. 202 269 IPR006458 -
Trre12g04642 307 Pfam Transcriptional repressor, ovate 206 268 IPR006458 -
Trre12g04642 307 MobiDBLite consensus disorder prediction 157 176 - -
Trre12g04642 307 MobiDBLite consensus disorder prediction 85 108 - -
Trre12g04642 307 MobiDBLite consensus disorder prediction 91 108 - -
Trre12g04642 307 MobiDBLite consensus disorder prediction 42 56 - -
Trre12g04642 307 NCBIfam uncharacterized plant-specific domain TIGR01568 200 269 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04642 Trre-Chr12 60397756 60398679 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre12g04642 Ovate 8.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04642 - - lja:Lj3g3v0160750.1 285.034