Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04633 ATGGAGTTATGGAGAGAATATGTTATGAAGAACAATGTGGGAAGAGAGTTTGTGGCAGGTGGATTTGGAGGCACAGCCGGTATCATCACGAGTTATCCATTCGATACTCTTCGTGTCATGCAACAACAGTCAGGCAATGCATCTGCTATCAACATCCTTAGAAATTTGTTGTCTAAGGAAGGACCAACTGCTCTTTACCGTGGCATGGCTGTTCCTTTGGCCTCTGTTGGTTTTCAAAACGCTATGATTTTCCAAAGTTATACAGTTTTTACGAGGATTTGTAGCCCTTCAAATTCTTCCAATGGACCTCCATCCCTCACCAATGTTGCTTTAGGAGGACTTGGTGCAGGTGCTCTCCAAAGTCTTTTGATATGCCCTATTGAGCTGATTAAAATTCGGATTCAACTGCAGAAAAACATTGGCAATTTTGGTACTCCTATGAGTTTGGCTAAGAACATTTGGAAAAATGAGGGCATTCGCGGCATTTATCGAGGATTTGGCATCACACTTCTTAGAGATGCACCTGCTCTTGGCTTCTACTTTGGTACATATGAATACATGAGGGAGAAACTTCACCCTGGTTGTAGAGAAACTTGTGAAGAAAATATGAGTACTGTGTTTATAGCCGGAGGGTTCGCAGGGATGTCGAGTTGGCTTTTCAACTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAAACATCTTCTTCAATGAAATACAAAGGTATCTTAGATTGTACCTTGAAAATAATCAAAGAAGAAGGTTCTATTGTGCTATGGAGGGGTTTAGGTGCAACACTTGTTAGAGCATTTGTGATGAATAGTGCTATATTTCCTGTTTATCAGGTTGCTCTTAGGTGTTTGGCCAACAATTAA 879 0.4096 MELWREYVMKNNVGREFVAGGFGGTAGIITSYPFDTLRVMQQQSGNASAINILRNLLSKEGPTALYRGMAVPLASVGFQNAMIFQSYTVFTRICSPSNSSNGPPSLTNVALGGLGAGALQSLLICPIELIKIRIQLQKNIGNFGTPMSLAKNIWKNEGIRGIYRGFGITLLRDAPALGFYFGTYEYMREKLHPGCRETCEENMSTVFIAGGFAGMSSWLFNYPTDVIKTRLQAQTSSSMKYKGILDCTLKIIKEEGSIVLWRGLGATLVRAFVMNSAIFPVYQVALRCLANN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04633 292 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Trre12g04633 292 Pfam Mitochondrial carrier protein 106 191 IPR018108 -
Trre12g04633 292 Pfam Mitochondrial carrier protein 203 291 IPR018108 -
Trre12g04633 292 Gene3D Mitochondrial carrier domain 7 291 IPR023395 -
Trre12g04633 292 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 12 289 - -
Trre12g04633 292 SUPERFAMILY Mitochondrial carrier 12 282 IPR023395 -
Trre12g04633 292 PRINTS Mitochondrial carrier protein signature 210 232 IPR002067 GO:0055085
Trre12g04633 292 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Trre12g04633 292 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Trre12g04633 292 PRINTS Mitochondrial carrier protein signature 163 181 IPR002067 GO:0055085
Trre12g04633 292 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Trre12g04633 292 ProSiteProfiles Solute carrier (Solcar) repeat profile. 201 288 IPR018108 -
Trre12g04633 292 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 190 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04633 Trre-Chr12 60356013 60358474 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04633 1 292 Antiporters AT1G79900 57.679 3.59e-108 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04633 K15109 - gmx:100801221 364.385