Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04631 ATGGAGTTTTGGACAGAATATGTTGTGAAGAACAATGTAGGAAGAGAGTTTGTGGCAGGTGGATTTGGAGGCACGGCCGGTATCATCACAAGTTACCCGTTCGATACTCTTCGCGTCATGCAACAACAGTCCGGAAGTCCCTCTGCCATCGGCATCCTCAAAAATTTGTTGGCTAAGGAAGGACCTACTGCTCTGTTCCGTGGCATGGCTGTGCCTTTGGCCTCCGTTGGTTTTCAAAATGCTATGATTTTTCAAAGTTATACAATTTTTACAAAGATATGTAGCCCTTCAAATTCTTCCAATGGACCTCCATCCCTCACCAATGTTGCTTTAGGAGGACTTGGTGCAGGTGCTCTCCAAAGTCTTTTGATATGCCCCATTGAGCTCGTTAAAATCCGCATGCAACTGCAGAAAAACATCGACTATTTTTCGAAAAACAAAAGGAGCACCCCTATGAATCTTGCTATGAACATTTGGAAAAATGAGGGCATTCGCGGCATTTATCGAGGATTTGGCATCACCGTTCTTAGAGATGCACCTGCCCATGCCTTCTATTTTGGGACATATGAGTACTTGAGGGAAAAACTTCACCCAGGTTGTAGAGAAAATTGTGAAGAAAGTGTGAGTACTATGTTTATAGCAGGAGGATTAGCAGGGATATCAAGTTGGATTTTCAATTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAAACATCTTCTTCATTGAAATACAAAGGTGTCTTAGATTGTACCTTAAAGATAATTAAAGAAGAAGGTTCTATTGTGCTATGGAGGGGTTTAGGAGCTACAATTGCTAGAGCCTTTGTTATGAGTAGTGCTATATTTCCTGTTTATCAAATTGCTCTAAGGTGTCTCACCAACAACTAA 894 0.415 MEFWTEYVVKNNVGREFVAGGFGGTAGIITSYPFDTLRVMQQQSGSPSAIGILKNLLAKEGPTALFRGMAVPLASVGFQNAMIFQSYTIFTKICSPSNSSNGPPSLTNVALGGLGAGALQSLLICPIELVKIRMQLQKNIDYFSKNKRSTPMNLAMNIWKNEGIRGIYRGFGITVLRDAPAHAFYFGTYEYLREKLHPGCRENCEESVSTMFIAGGLAGISSWIFNYPTDVIKTRLQAQTSSSLKYKGVLDCTLKIIKEEGSIVLWRGLGATIARAFVMSSAIFPVYQIALRCLTNN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04631 297 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Trre12g04631 297 PRINTS Mitochondrial carrier protein signature 215 237 IPR002067 GO:0055085
Trre12g04631 297 PRINTS Mitochondrial carrier protein signature 168 186 IPR002067 GO:0055085
Trre12g04631 297 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Trre12g04631 297 Pfam Mitochondrial carrier protein 106 196 IPR018108 -
Trre12g04631 297 Pfam Mitochondrial carrier protein 207 296 IPR018108 -
Trre12g04631 297 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Trre12g04631 297 Gene3D Mitochondrial carrier domain 8 296 IPR023395 -
Trre12g04631 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Trre12g04631 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 13 294 - -
Trre12g04631 297 SUPERFAMILY Mitochondrial carrier 13 287 IPR023395 -
Trre12g04631 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 195 IPR018108 -
Trre12g04631 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 293 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04631 Trre-Chr12 60345870 60348419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04631 1 297 Antiporters AT1G79900 56.040 9.28e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04631 K15109 - gmx:100801221 370.548