Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04630 ATGAACGGTGGAGGGAGACAAGGACTTAGATCTAGTGGTGCTACCGGCGTTCACCACCAACGACAATACTCCGAGAATTTTCTCGACGGCGCCACTACCGGTAACAGATGGCTTCAATCTGCCGGACTTCAACATCTTCAATCCTCCGCCGCCAATCCACTTCAGGATTATAATTTGTACGGCGGTGGTGCGCAGGGAGGAAGAATGTATAGGAATGCTCAGAGAAGCTATAACGGTGGAGGGAGTGATTATTATATGGAACCTGCATCGCCTCCTGATGCTTTCCGTGCTTCGAATTTGAAGATGAACGGTGAAGATTCCACTGGTGATTTCAGTCCTGGCTTGTTGGATCTGCATTCATTTGATACTGAACTTCTTCCTGAGATCCCAGCCTCCAATCCATATGAGTCGAACTCCTTGTATCGTGTTAGAAGTTTTGATGACACTGAACCTTATATGATGAGCAAACAGACTGCCAAAGCTCGTGCTCCTGACAACGCATTGAAAACTTTACCTGCTGAGAAAGAGAAGACTAGTTCTGTGGCAAAGATTAAAGTTGTGGTTCGTAAGAGACCTTTGAATAAGAAGGAATTAGCAAAGAATGAGGAAGACATTATAGAAACATATGCCAATTCTTTAACAGTGCACGAAACTAAACTGAAGGTTGACTTAACTCAGTACTTAGAGAAGCATGAATTTGTTTTTGATGCTGTCTTGAATGAAGAGGTCACAAATGATGAGGTGTATCGTGAAACAGTTGAACCCATAGTTCCAATCATCTTTGAACGCACTAAGGCAACTTGCTTTGCATACGGGCAAACAGGAAGTGGAAAAACATATACCATGAAGCCACTGCCACTTAAAGCATCAAGGGACATCCTAAGATTGATGCATCATACTTATCGGAACCAAGGATTTCAATTGTTCGTGAGTTTCTTTGAAATATATGGAGGGAAGCTTTATGATCTCCTTAATGATAGAAAAAAGCTTTGCATGAGGGAAGATGGTAGCAAGCAAGTTTGCATTGTTGGTTTGCAAGAATACCGCGTAGCGGATGTAGAGAACATCAAAGACCTGATTGAGAAAGGAAGTGCAACAAGAAGTACAGGAACCACAGGTGCAAATGAGGAATCTTCACGGTCTCATGCAATACTTCAACTTGCTATCAAGAGGTCAGTTGATGGCAATGAATCAAAACCTCCCCGACTTGTTGGCAAGCTCTCCTTCATAGATCTTGCTGGAAGTGAACGTGGAGCGGATACCACTGACAATGACAAACAGACAAGAATAGAAGGCGCTGAAATCAATAAGAGCTTACTTGCCCTAAAGGAATGCATTAGAGCTCTTGATAACGACCAAGGACACATCCCTTTCAGGGGAAGTAAACTGACTGAAGTTTTGAGAGATTCTTTTGTTGGGAATTCCCGTACTGTTATGATATCATGCATATCACCAAGCTCTGGTTCATGCGAGCACACTCTGAATACATTAAGATATGCTGACAGGGTGAAAAGCCTGTCAAAAGGGAACAACTCGAAGAAGGATGTTTTATCATCAAATTTCAACCTTAAAGAATCAATTACAGTTCCCTTATCTTCTGTTACTGCACCGGCCTATGAGGATTACACAGCTGATACATGGCGTGATGAAAATGAAGGGGATGATTTTAGCCCCCCTGAAGAGTACTATGAGCAAGTGAAACCACCGTCGAAGAAAAATGTAAGGATGGAGTCATATGCGATGACTGATGACAAATTGAAGAAACCTAGTGGTCTAGTCAAATGGAAGGACCTCCCAAAACCTGAACCTAAACCCACTAATTCAGAGGATGATTTAAGTGCCCTCTTACAGGAAGAAGAGGATCTTGTAAGTGCTCACCGGACACAAGTAGAGGAGACCATGAATATTGTTAGAGAGGAAATGAACCTCTTGGTTGAAGCAGATCAGCCAGGGAATCAGCTCGATGATTACGTAACAAGACTAAACACCATTCTTTCTCAGAAAGCTGCTGGCATTCTACAGTTGCAAAACCGTTTAGCTCATTTTCAGAAACGTTTAAAGGAGCATAATGTCTTGGTTTCATCTTCTGGTTACTAG 2097 0.4249 MNGGGRQGLRSSGATGVHHQRQYSENFLDGATTGNRWLQSAGLQHLQSSAANPLQDYNLYGGGAQGGRMYRNAQRSYNGGGSDYYMEPASPPDAFRASNLKMNGEDSTGDFSPGLLDLHSFDTELLPEIPASNPYESNSLYRVRSFDDTEPYMMSKQTAKARAPDNALKTLPAEKEKTSSVAKIKVVVRKRPLNKKELAKNEEDIIETYANSLTVHETKLKVDLTQYLEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLNDRKKLCMREDGSKQVCIVGLQEYRVADVENIKDLIEKGSATRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSNFNLKESITVPLSSVTAPAYEDYTADTWRDENEGDDFSPPEEYYEQVKPPSKKNVRMESYAMTDDKLKKPSGLVKWKDLPKPEPKPTNSEDDLSALLQEEEDLVSAHRTQVEETMNIVREEMNLLVEADQPGNQLDDYVTRLNTILSQKAAGILQLQNRLAHFQKRLKEHNVLVSSSGY 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04630 698 Coils Coil 672 692 - -
Trre12g04630 698 MobiDBLite consensus disorder prediction 1 20 - -
Trre12g04630 698 PRINTS Kinesin heavy chain signature 406 424 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 PRINTS Kinesin heavy chain signature 372 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 PRINTS Kinesin heavy chain signature 456 477 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 PRINTS Kinesin heavy chain signature 263 284 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 MobiDBLite consensus disorder prediction 590 610 - -
Trre12g04630 698 SMART kinesin_4 181 512 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 MobiDBLite consensus disorder prediction 548 570 - -
Trre12g04630 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 506 IPR027417 -
Trre12g04630 698 FunFam Kinesin-like protein 164 509 - -
Trre12g04630 698 ProSitePatterns Kinesin motor domain signature. 405 416 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre12g04630 698 Gene3D Kinesin motor domain 157 509 IPR036961 -
Trre12g04630 698 Pfam Kinesin motor domain 189 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g04630 698 PANTHER KINESIN-RELATED PROTEIN 6 33 560 IPR027640 GO:0003777|GO:0007018
Trre12g04630 698 CDD KISc_KIF2_like 183 504 - -
Trre12g04630 698 MobiDBLite consensus disorder prediction 590 607 - -
Trre12g04630 698 ProSiteProfiles Kinesin motor domain profile. 183 506 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04630 Trre-Chr12 60339157 60343693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04630 183 506 Calmodulin-binding Proteins AT5G65930 34.731 5.06e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04630 K10393 - gmx:100799100 1208.74