Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04628 ATGGGTAAGGGTACCGGAAGTTTCGGTAAGAGAAGGAACAAGACTCACACACTCTGTGTGAGGTGTGGCCGCCGCAGTTTCCACCTCCAGAAAAGTCGATGCTCCGCCTGTGCATACCCTGCTGCTCGTGTCAGGAAATATAACTGGAGTGAAAAGGCAATCCGTAGAAAGACCACTGGAACTGGTAGGATGAGGTACCTGCGTAACGTTCCTCGCCGATTCAAGAGTGGCTTCAGAGAGGGAACTGAAGCTGCACCTAGGAAGAAGGGAGGAGTTGCAACTGCTTAA 288 0.5174 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGGVATA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04628 95 FunFam Ribosomal protein L37 1 88 - -
Trre12g04628 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 90 - -
Trre12g04628 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre12g04628 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Trre12g04628 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Trre12g04628 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Trre12g04628 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04628 Trre-Chr12 60331843 60332761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04628 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 86.316 3.27e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04628 K02922 - gmx:100527725 190.274