Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04614 ATGGTGTCAATGAAGAAGAAGGAAGTTATAAAACCTGAACAACAACAACAACAACAACAACAACCTTCAAACTCTAAGAATGATTGTTTTAGTACGTCGAAGGTACGAACTTTCTCATGCAAGTTTTGCAAGAAACAATTTTCTTCTTCACATGCTTTAGGTGGACACCAAAACGCTCATACGAAAGAGCGCACACTTGCAAAGCATCGCCAAGAGATTATGAATAGTTTTGGAACCCCTCATTATCCTTTTTCTTACTATAATAATAATCGTCCTAGTCTTTATACGCCCCCTTATCAAGGATATGGATCATATACTGGAGCACTTGAAATTAAGTTAGAGTCCATGTTTCAAAAGCCTAGTAATATATGGATCCCACCTCCTTTCAAATATGATTCTACTCCGCCAAGGCAAGAGATGAAAAAAAATTCTTCTATTGATGAAGTGAAGAACGAGGGTCTTGATGCTAATAATCGTCGCACCAACAAAGAAGAAGTCTCTGATTTTGAAAACACTGAGCTTGATTTATCTCTTAAACTTTGA 543 0.3665 MVSMKKKEVIKPEQQQQQQQQPSNSKNDCFSTSKVRTFSCKFCKKQFSSSHALGGHQNAHTKERTLAKHRQEIMNSFGTPHYPFSYYNNNRPSLYTPPYQGYGSYTGALEIKLESMFQKPSNIWIPPPFKYDSTPPRQEMKKNSSIDEVKNEGLDANNRRTNKEEVSDFENTELDLSLKL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04614 180 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Trre12g04614 180 MobiDBLite consensus disorder prediction 131 180 - -
Trre12g04614 180 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 172 IPR044246 GO:0009788
Trre12g04614 180 Gene3D Classic Zinc Finger 30 80 - -
Trre12g04614 180 MobiDBLite consensus disorder prediction 135 180 - -
Trre12g04614 180 MobiDBLite consensus disorder prediction 13 30 - -
Trre12g04614 180 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Trre12g04614 180 MobiDBLite consensus disorder prediction 1 30 - -
Trre12g04614 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04614 Trre-Chr12 60238306 60238848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04614 5 73 C2H2 Transcription Factor Family AT5G01860 46.753 4.79e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04614 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04614 - - tpra:123896691 230.72