Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04613 ATGGCTTCAATCTCTAATCCATCCTCTACCACTTCAGAAGGTTCCCAAAAAAGTTGTGAAGAAGAGAACAACATCAACAACAAGGGGAAAGAAGTTGTGCAATGTCAACAACATCAAACTCCAATCTCCAATACAAAGTTGCTTCTTGATATCATCAAGCAATCAAAAGATGATTCAATTCGCGGCTCGAAAGTGCAAGAGCGTGATTTTTTCACCCCCACAAAAAATTTGGAGGTTGGTTCATCTTCATTAAGTTGGTCTAATAATAAGACCAACAATGAAAAGAACACTGAAAATAAGTCCTCTGACTCGAAGACTTTTTCTTGCAGTTATTGCAGGAGACAGTTTTCTACTACCCAGGCTTTAGGAGGGCACCAAAATGCTCATAGGCGTGAGCGTGCACTTGCAAAACATCGTCAAGAGCTCCATAATAATGGCGGCTTTGGGATCCCTCAGCATCCTTTTCCTTACTACACTAATTATCCTAGCCTTTCTTCATCTAATTATTATGGGTTTGGATCCTTTAATAATCCCCTTGGAATTAGGATGCAGTACTCCATGATCCACAAGCCAAGCTATTCATTGACCCCACCTCCTTATAGGTTCGGTTCTACTCCTACTTGGACTTGGAACAACAATGCAAGTAGTTCAACTCCAACATGGACACCAATGCAAGAGATGAGAAACTTTTCTTCACTTGGTGGATTGAAGATTGATGGTCTTAACACAAATAATGGAAGTAGTGCAACTCCAACTTGGTTGAATAATGTTGCTACAAATAATGTTCATCATGGTATGGAGAAGGAAGAAGACTCTGATTCAGAATCTACCGAACTTGATTTGACGCTTAAACTTTGA 858 0.3986 MASISNPSSTTSEGSQKSCEEENNINNKGKEVVQCQQHQTPISNTKLLLDIIKQSKDDSIRGSKVQERDFFTPTKNLEVGSSSLSWSNNKTNNEKNTENKSSDSKTFSCSYCRRQFSTTQALGGHQNAHRRERALAKHRQELHNNGGFGIPQHPFPYYTNYPSLSSSNYYGFGSFNNPLGIRMQYSMIHKPSYSLTPPPYRFGSTPTWTWNNNASSSTPTWTPMQEMRNFSSLGGLKIDGLNTNNGSSATPTWLNNVATNNVHHGMEKEEDSDSESTELDLTLKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04613 285 Gene3D Classic Zinc Finger 81 146 - -
Trre12g04613 285 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 285 IPR044246 GO:0009788
Trre12g04613 285 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Trre12g04613 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Trre12g04613 285 MobiDBLite consensus disorder prediction 81 95 - -
Trre12g04613 285 MobiDBLite consensus disorder prediction 81 105 - -
Trre12g04613 285 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Trre12g04613 285 Pfam C2H2-type zinc finger 107 132 - -
Trre12g04613 285 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g04613 285 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04613 Trre-Chr12 60235934 60236791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04613 101 192 C2H2 Transcription Factor Family AT5G10970 44.681 8.06e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04613 zf-C2H2_6 2.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04613 - - tpra:123886838 274.633