Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04611 ATGTGTGTTGTAGACATGTCCAATAATCCTCCTCCTTCTTCTTCTCGTGCCAAAGATTTCTTTCCCTCTCCAGCTCTCTCTCTTAGCCTTGCGGGGATTTTTCGGCATGGTGGGATGGCGGCGGAGGGTGAAGGGGCGAGTACTAGTAACATGGAGGTGGAGGAAGGGGAGGAAGGGAGTACCGTCGGAGGTGATCAACGCGTGGAGGAAATTAGCAGTGAGTATTCCGGTCCAACGAAATCCAAATCAGAGGATGAATTTGATGGAGATGGAGATGAAGATGATGAAGGTGATGGAGATAATAAGCATAAGAAGAAAAAAAGAAAGAAATATCATAGACACACAGCTGAACAAATCAGAATCATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAAAGACATGAAAATTCATTATTGAAAAGTGAAATAGAGAAATTAAGAGAGAAAAATAAGACCCTAAGAGAGACCTTAAACAAAGCATGTTGCCCCAATTGTGGGGTACCCACTACAAACAAAGATGGTGCCATGCCAACTGAAGAACAACAACTACGTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAGCTACGAGCAGCTTTAGGGAAACATGCATTAGGGACAATGTCACCTTCATGTTCTACAAGCCATGACCAAGAGAATATTAAAAGTTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATGAAACAAGAATAATGGATGTAGTAAACCAAGCAATGGATGAACTTATAAAGATGGCTACAATGGATGAACCATTGTGGCTACGTAGTTTAGAGACTGGTCGTGAAATACTTAATTATGATGAATATATGAAGGAATTTGTAGTTGAAAATTCAGATAATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCCAAGGATTGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCTGCAACAGTTGACATTATATGCAAAGGAGAAAGTTCTAACAAGAATGGTGCTGTCCAACTGATGTTTGCTGAGCTGCAAATGTTAACACCAATGGTTCCTACTAGAGAAGTGTATTTTGTCAGATACTGCAAACAATTGAGTGGTGAAAAATGGGCAATTGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTCGTGAAGTGCAGAAAACGACCATCTGGTTGCATTATTGAGGATAAGTCAAATGGTCATTGCAAAGTAATATGGGTAGAGCACTTGGAGTGCCAAAAGAGTGCAGTTCATTCGATGTATCGCACCATTGTCAACAGTGGCTTAGCTTTTGGGGCGAGGCATTGGATTGCGACTCTTCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCTATTAGTGCATCAAGCTTCCATACATGGACTAAGGTTACTAGTAAAACTGGAGAAGATATAAGGATTAGTTCTAGAAAGAATTTGAATGATCCTTGTGAACCTCTTGGATTGATACTTTGTGCAGTTTCTTCTGTATGGTTGCCTATATCTCCTAATGTTTTATTTGATTTCTTGAGGGATGAAGCTCGTCGTACGGAGTGGGATATCATGTCTAGTGGTGGGGCAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACAATCCAAACAATTAAATCTAAAGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAATCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAGTCTGTGATGACTGGATGCGATTCGAGCAATCTTGCCATACTTCCCTCGGGATTCTCAATTATTCCTGATGGTCTAGAGTCAAGGCCAATGGTTATCACTTCAAGGCAGCAAGAGAAAAACACAGATGGAGGATCTTTGTTTACAGTAGCATTCCAGATCCTTACAAATTCTTCTCCTACTGCCAAACTAACAATGGAGTCTGTGGACTCTGTCAACTCTCTTGTATCATGTACATTGAGACACATCAGAACAAGTTTAAATTGTGAAGATGGTTAG 2289 0.4028 MCVVDMSNNPPPSSSRAKDFFPSPALSLSLAGIFRHGGMAAEGEGASTSNMEVEEGEEGSTVGGDQRVEEISSEYSGPTKSKSEDEFDGDGDEDDEGDGDNKHKKKKRKKYHRHTAEQIRIMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREKNKTLRETLNKACCPNCGVPTTNKDGAMPTEEQQLRIENVKLKAEVEKLRAALGKHALGTMSPSCSTSHDQENIKSSLDFYTGIFGLDETRIMDVVNQAMDELIKMATMDEPLWLRSLETGREILNYDEYMKEFVVENSDNGRPKRSIEASRDTGVVFADLPRIVQCFLDANQWKEMFPCLISKAATVDIICKGESSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSGEKWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSFHTWTKVTSKTGEDIRISSRKNLNDPCEPLGLILCAVSSVWLPISPNVLFDFLRDEARRTEWDIMSSGGAVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPMVITSRQQEKNTDGGSLFTVAFQILTNSSPTAKLTMESVDSVNSLVSCTLRHIRTSLNCEDG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04611 762 SUPERFAMILY Bet v1-like 271 501 - -
Trre12g04611 762 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Trre12g04611 762 CDD homeodomain 115 163 IPR001356 GO:0003677
Trre12g04611 762 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Trre12g04611 762 SUPERFAMILY Homeodomain-like 96 166 IPR009057 -
Trre12g04611 762 MobiDBLite consensus disorder prediction 1 22 - -
Trre12g04611 762 CDD START_ArGLABRA2_like 274 500 - -
Trre12g04611 762 FunFam Homeobox-leucine zipper protein HDG1 93 181 - -
Trre12g04611 762 Coils Coil 215 235 - -
Trre12g04611 762 MobiDBLite consensus disorder prediction 39 115 - -
Trre12g04611 762 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Trre12g04611 762 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Trre12g04611 762 Coils Coil 164 194 - -
Trre12g04611 762 SMART HOX_1 107 169 IPR001356 GO:0003677
Trre12g04611 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 758 IPR042160 -
Trre12g04611 762 SMART START_1 277 501 IPR002913 GO:0008289
Trre12g04611 762 Gene3D - 95 177 - -
Trre12g04611 762 Gene3D - 278 496 IPR023393 -
Trre12g04611 762 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Trre12g04611 762 Pfam START domain 279 501 IPR002913 GO:0008289
Trre12g04611 762 SUPERFAMILY Bet v1-like 530 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04611 Trre-Chr12 60218855 60226243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04611 71 761 Homeobox Transcription Factor Family AT1G79840 64.530 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g04611 START 1.8e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04611 K09338 - gmx:100809926 1258.43