Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04599 ATGATGGCTGGTAACCCTAACTGGTGGAACATGCATCCACCATCTTTGAATATCCCTCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTCAATTCCTTGACTGAAAATTCTCAAGTACCACCTCAATCATGGAGTCAACTACTTTTTACTGGAGTACCTGGAGAAGAAGAGAGGCTTGGTTTCAATCATTTTGAGCCAAAAAACTCAGAAAACTGGGATGTGCAAATTCTTAATCCATCTTCAAGAGTTCCTATTATGGATGTAATAAAGCATGAAGTTTCTCAAAGTGAGAATTTTTATGGCCAACAAGGACATCATCATCATCATCATCATGAGGAGTTTCATGCTAATAATAATTCTGGATCAATTGGTTCATCTTGGTCACATATGGTGCCAGTTTCTTCACCAAGTTCTCATGTCACTAGCTTAAGTAGTGATAATAATATGTTGGATTTCACTTATAACAAGCTAGATCATAGCAAGAATTTACTACAAGATCAAATATCTGAGTGTAATAGTTCCACTATTAATGGAGTCAATAAGAAGGCTAGGGTTCAGCCATCTTCATCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCACCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGGTTTCTTCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGACACTGCAGCATCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGTGCTCCTATTCCAAACCAGAATGCAGAAGCTAATAAGGCAAAGGATTTGAGGAGTAGAGGGTTGTGTTTGGTTCCTGTGTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAA 1014 0.3945 MMAGNPNWWNMHPPSLNIPPQYMLGSSSIPFNSLTENSQVPPQSWSQLLFTGVPGEEERLGFNHFEPKNSENWDVQILNPSSRVPIMDVIKHEVSQSENFYGQQGHHHHHHHEEFHANNNSGSIGSSWSHMVPVSSPSSHVTSLSSDNNMLDFTYNKLDHSKNLLQDQISECNSSTINGVNKKARVQPSSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTAASKNMMRNQHSVHVERNSVFPEDPGQLLDDTGLKRKGAPIPNQNAEANKAKDLRSRGLCLVPVSCTQHVGSENGADYWAPAFGSGF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04599 337 CDD bHLH_AtbHLH_like 197 244 IPR045239 -
Trre12g04599 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 319 - -
Trre12g04599 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 248 IPR036638 GO:0046983
Trre12g04599 337 MobiDBLite consensus disorder prediction 103 128 - -
Trre12g04599 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Trre12g04599 337 FunFam Transcription factor bHLH123 family 197 261 - -
Trre12g04599 337 Gene3D - 197 263 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04599 Trre-Chr12 60074360 60078164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04599 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 37.640 1.35e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04599 - - gmx:100802121 427.172