Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04598 ATGTCTACACCATTAGAACATGATTACATAGGTTTGACAGATAATACTTCAATGGAAAAAACATCTTCATCTCTCAACTTCAAGGAGACAGAGCTGAGACTAGGTCTACCTGGTTGTGAATCTCCTGACAGAAAACAAGTTACTACTGCTAGTGGAGGAAGAGTGTCTTTCTTTGGTAACAAGAATTTGAACATTAATGTTTGTTCTCCTTTGAAGAACCTTGTAGCTAATGTTGGAGCTAAAAGAGGTTTCTCTGATGCTATTGATGAATCTTCTAGCAAATGGATTTTCTCTGTTAATGATGAATCTCAAGCTGTAACTACTTTGTTTTCTCCTAGAGGAGGAGGGAATGTTGGAAAATCTCTTGTTGGTTTAGAGACTCAAACTAATACTCAGAAGATTAATATAAATGTACCAAAAAATATCAATGAGATTCTTCACCAATCTGTGAAACCAGTAGTACATGAAAAGAATAAACAGGTTGATGGAACAAATGAGGATGCTAATGCTCCTGCTGCAAAGACACAGATTGTGGGATGGCCACCAATTCGATCGTTTAGAAAGAACACGATGGCATCGAATTTGACTAAGAACAATGATGAAGCTGAGGGAAAACAAGGATTTGATTGTTTCTATGTAAAAGTTAGTATGGATGGTGCTCCTTATCTCAGAAAAGTTGATCTCAAATTTTACAACAACTATATGGAATTTTCTTCAGCTCTTGAGAAGATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATAAAGATAAAGATGGAGATTGGATGCTTGTAGGCGATGTTCCTTGGGGGATGTTTGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGGTCCAAGAGCCATGGAAAAATCTTAG 981 0.3823 MSTPLEHDYIGLTDNTSMEKTSSSLNFKETELRLGLPGCESPDRKQVTTASGGRVSFFGNKNLNINVCSPLKNLVANVGAKRGFSDAIDESSSKWIFSVNDESQAVTTLFSPRGGGNVGKSLVGLETQTNTQKININVPKNINEILHQSVKPVVHEKNKQVDGTNEDANAPAAKTQIVGWPPIRSFRKNTMASNLTKNNDEAEGKQGFDCFYVKVSMDGAPYLRKVDLKFYNNYMEFSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYKDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLGPRAMEKS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04598 326 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 317 IPR003311 GO:0005634|GO:0006355
Trre12g04598 326 Gene3D - 205 323 - -
Trre12g04598 326 FunFam Auxin-responsive protein 205 322 - -
Trre12g04598 326 SUPERFAMILY CAD & PB1 domains 210 311 - -
Trre12g04598 326 ProSiteProfiles PB1 domain profile. 210 312 IPR000270 GO:0005515
Trre12g04598 326 Pfam AUX/IAA family 29 321 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04598 Trre-Chr12 60060217 60062511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04598 212 324 B3 DNA Binding Superfamily AT1G30330 28.319 5.23e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre12g04598 AUX_IAA 1.7e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04598 K14484 - gmx:100806699 437.573