Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04587 ATGAAACAAACAAGAAACTGTTACGAAACTTCAAATTTAACAAACTCTTCAAAACCTCAAAAAACAGAGACAAAGAAACAGAGCAAGGTGAAGAAAAACAGAGACTCTAGTAACCATCCAGTTTACCATGGTGTTCGAATGCGAAGTTGGGGAAAATGGGTATCTGAAATTCGTGAACCTCGCAAGAAATCACGAATCTGGCTTGGAACTTTTGCAACTCCTGAAATGGCAGCAAGAGCACACGATGTTGCTGCTTTGAGCATAAAGGGTCATTCACCTATTCTTAATTTTCCCGAAATAGCTCACGTGCTTCCAAGACCTGTCACGTTGAATCCACGTGATATACAAGTTGCTGCTGCAGAAGCTGCTTCGATGGTGGAATTTGATTCTCCAATGTCACACTCTGACTCAGGTGAGTCAGGTTCATCATGTTCATCATTTTCATCAGAGTCTTCAGAGCTGAGTGAGATTGTTGAGCTTCCTAATATAGAAGAAAGTTTTGACTCGGGTGAGTTGAGAAGTGAGTTTATTTTGATTGACTCGGTGGAAAGTTGGGTGTATCCGTCAGTAGAAAGTTTGTGTGACATGGTGATTGAAGAACAGAGTTTTATGTTATGA 618 0.4061 MKQTRNCYETSNLTNSSKPQKTETKKQSKVKKNRDSSNHPVYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSPILNFPEIAHVLPRPVTLNPRDIQVAAAEAASMVEFDSPMSHSDSGESGSSCSSFSSESSELSEIVELPNIEESFDSGELRSEFILIDSVESWVYPSVESLCDMVIEEQSFML 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04587 205 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Trre12g04587 205 Pfam AP2 domain 40 91 IPR001471 GO:0003700|GO:0006355
Trre12g04587 205 MobiDBLite consensus disorder prediction 129 148 - -
Trre12g04587 205 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Trre12g04587 205 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Trre12g04587 205 MobiDBLite consensus disorder prediction 22 41 - -
Trre12g04587 205 MobiDBLite consensus disorder prediction 1 41 - -
Trre12g04587 205 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Trre12g04587 205 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Trre12g04587 205 MobiDBLite consensus disorder prediction 1 21 - -
Trre12g04587 205 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Trre12g04587 205 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Trre12g04587 205 MobiDBLite consensus disorder prediction 130 148 - -
Trre12g04587 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 166 - -
Trre12g04587 205 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04587 Trre-Chr12 60011077 60011694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04587 9 188 AP2-EREBP Transcription Factor Family AT5G11590 56.771 1.28e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre12g04587 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04587 K09286 - gmx:100784419 256.914