Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04584 ATGGCATCCCTTGTATTCAGTTGCTTCATCATTTTCTTGGTTTCTGTCACTACTGTTCAATCTGCAAGACAATTCCATGTTGGTGATCACTTGGGTTGGCGTCAACCTGATCAAAACAACACTGCTTTTTACACCCAATGGGCTCAAAAAAACAGATTCCAAATCGGAGACTCCCTCGTATTTGAGTATGAGAATGATTCAGTTCTTAGTGTGGAGAAATTTGATTACTTTAACTGTGATACAAGTGAACCTATCACCACTTTTACCAATGGAAAGAGCACTCTTAATCTTGACAGATCAGGACCTTTCTACTTCATAAGTGGAACTGATGATCATTGCAGCCATGGCCAAAAATTGCTCGTTGAAGTTATGGCGCCGCATTCAATTCCAGCATCTCCACCCACCACAATTGCAGTTCCGCCTCAAGGTTCATCACCAAACATGGCTCCTTCGGATTCGCCTTATTCTTCTGATACCTTTGACCAGGCTTCTTCATCATCCACCATGGTGCTTGCTTCAAGTTTTCTGTCTACTTTGGTCACATTTGGAAATGTGATGATGTTTGCGCTCTAA 573 0.4206 MASLVFSCFIIFLVSVTTVQSARQFHVGDHLGWRQPDQNNTAFYTQWAQKNRFQIGDSLVFEYENDSVLSVEKFDYFNCDTSEPITTFTNGKSTLNLDRSGPFYFISGTDDHCSHGQKLLVEVMAPHSIPASPPTTIAVPPQGSSPNMAPSDSPYSSDTFDQASSSSTMVLASSFLSTLVTFGNVMMFAL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04584 190 Pfam Plastocyanin-like domain 38 117 IPR003245 GO:0009055
Trre12g04584 190 SUPERFAMILY Cupredoxins 22 124 IPR008972 -
Trre12g04584 190 CDD OsENODL1_like 23 124 IPR041846 -
Trre12g04584 190 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055
Trre12g04584 190 Gene3D - 22 133 IPR008972 -
Trre12g04584 190 MobiDBLite consensus disorder prediction 141 160 - -
Trre12g04584 190 MobiDBLite consensus disorder prediction 132 160 - -
Trre12g04584 190 PANTHER BLUE COPPER PROTEIN 22 150 IPR039391 GO:0009055
Trre12g04584 190 FunFam Early nodulin-like protein 1 22 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04584 Trre-Chr12 59993817 59994477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04584 8 127 Phytocyanin Superfamily AT1G79800 51.667 2.65e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04584 - - tpra:123905166 224.172