Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04581 ATGTCTTGTAAAGATGGTAAAGGTGGAAATGGAATAGATAACGGAAAATATGTTCGTTATACACCTGAACAAGTTGAAGCTCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTAGTATTCGTCGTCAACAGCTTATTAGAGAGTGTCCTATTCTCTCTCACATTGAACCTAAGCAGATCAAAGTTTGGTTCCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCACGTTTGCAAGCTGTGAATAGGAAGTTGAATGCTATGAATAAGCTGCTTATGGAGGAGAATGACAGGTTGCAGAAACAAGTTTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACTCAAAATACTAAACTTGCAACCAAAGACACAAGCTGTGATTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGCGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATACTCTGAATGTGCTCCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATACGCGCCAACTACACTGGCTCCTGCACGGGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCTCTTAAAAATACACAGAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTCAGAGCTGAGATGCTTCCCAGCGGGTACTTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTTCCTGAAGTACTGCGTCCACTGTATGAATCATCAACAATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCGGCAGCACTTCGAGCACTTGGTCAAAGACTGAGCCGGGGTTTCAATGAGGCGCTTAATGGGTTTACTGACGAGGGATGGTCAATGATCGGCAATGATGGTGTTGACGATGTTACAATTCTAGTGAATTCATCACCTGACAAATTAATGGGTTTGAATCTATCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCTAAAGCTTCAATGCTATTACAAAATGTGCCTCCAGCCATTTTACTAAGGTTTCTACGGGAGCATAGATCAGAATGGGCCGACAACAACATGGATGCTTACTCCGCTGCTGCTATCAAAGTTGGTCCTTGTAGTTTCTCAGGATCTCGGGTTGGAAATTATGGGGGCCAAGTAATTCTTCCTCTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCCGAAGACACAATAATGCCTAGAGACGTGTTTCTTTTACAACTCTGCAGTGGAATGGATGAGAACGCCGTTGGTACCTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATTATTCCTCTTGATTCTGGAAAGGAAGTGGCCAACCCAAATCGCACCCTTGACCTGACATCTGCCCTTGATATTGGCCCCGCTGGAAACAAATCTTCAAATGATAATTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGACCATGTAGCATCTATGGCACGACAATATGTTCGCAGCATTATATCCTCTGTCCAAAGGGTAGCATTGGCACTTTCACCTTCTAATTTGAGTTCACAAGCTGGGCTCAGGACACCACTAGGTACTCCTGAAGCTCAAACACTTGCTCGTTGGATCTCTAACAGTTATAGGTGCTTCTTGGGTGCTGAGCTACTTAAGTCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTATGGCATCACTCCGATGCAATACTGTGCTGTACTCTAAAGGCAACTCCCGTGTTCACTTTCGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTCTACAGGATATAGCATTGGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCGGAGTTTCCTCAAATTATACAACAGGGTTTTGCATGTCTACAAGGTGGTCTTTGTCTCTCAAGCATGGGGAGACCTATTTCATACGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTAGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2514 0.4447 MSCKDGKGGNGIDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLNAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTKLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDTLNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPRDVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEVANPNRTLDLTSALDIGPAGNKSSNDNSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSNLSSQAGLRTPLGTPEAQTLARWISNSYRCFLGAELLKSNNEGNESLLKSLWHHSDAILCCTLKATPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCISFMFVNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04581 837 CDD bZIP 68 107 - -
Trre12g04581 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Trre12g04581 837 Gene3D - 194 378 IPR023393 -
Trre12g04581 837 MobiDBLite consensus disorder prediction 126 152 - -
Trre12g04581 837 MobiDBLite consensus disorder prediction 126 147 - -
Trre12g04581 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Trre12g04581 837 Coils Coil 71 105 - -
Trre12g04581 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Trre12g04581 837 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Trre12g04581 837 Pfam MEKHLA domain 694 836 IPR013978 -
Trre12g04581 837 SMART START_1 159 369 IPR002913 GO:0008289
Trre12g04581 837 SUPERFAMILY Bet v1-like 159 368 - -
Trre12g04581 837 ProSiteProfiles START domain profile. 150 351 IPR002913 GO:0008289
Trre12g04581 837 CDD START_ArGLABRA2_like 154 369 - -
Trre12g04581 837 Pfam START domain 160 368 IPR002913 GO:0008289
Trre12g04581 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Trre12g04581 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Trre12g04581 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Trre12g04581 837 Gene3D - 11 82 - -
Trre12g04581 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04581 Trre-Chr12 59965486 59972550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04581 1 789 Homeobox Transcription Factor Family AT1G52150 84.956 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g04581 START 6.5e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04581 K09338 - gmx:100800165 1546.56