Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04573 ATGGCTCATGAATTTCTTAATGTGCTTCTCATATATTGTTCGCCATTGCTTGGTCTATGGGCATGGCTTTTATTAGTTAAATCTATAGAGTTTTTTGGACCTAGAATAGTAAATTTGATTAAGACATTAACCCACTTGCACCAAGAACATGAAAGGAGTGAATTTGAAACTACAATAGTTTGGGCTAGCATGGAACATTATAGAGAAGATGAACAAGTTAATATGTCTTTTGATGAAAGAGCAAAGATTGCTAGGTTGATGATAAGAGTGTTGCCACCGGTTAAAACCTTTGATGGAGATGAAACTAGTGATTGTTCTATTTGCATGGAAGAATTTAAGAAAGGGGAGTTGACTCAACCTTTTGTTTTATGTGCACATGAATTTCATGCTTCATGCCTCAATTCTTGGTTACTTGGAGGAAAAACAACTTGTCCTATTTGTCGTCAAGATTTATCAACTACAGTTAGATCCACATAA 477 0.3501 MAHEFLNVLLIYCSPLLGLWAWLLLVKSIEFFGPRIVNLIKTLTHLHQEHERSEFETTIVWASMEHYREDEQVNMSFDERAKIARLMIRVLPPVKTFDGDETSDCSICMEEFKKGELTQPFVLCAHEFHASCLNSWLLGGKTTCPICRQDLSTTVRST 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04573 158 SUPERFAMILY RING/U-box 104 153 - -
Trre12g04573 158 SMART ring_2 105 147 IPR001841 -
Trre12g04573 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 157 IPR013083 -
Trre12g04573 158 ProSiteProfiles Zinc finger RING-type profile. 105 148 IPR001841 -
Trre12g04573 158 Pfam Ring finger domain 104 148 IPR001841 -
Trre12g04573 158 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 78 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04573 Trre-Chr12 59873117 59873593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04573 67 155 C3H Transcription Factor Family AT1G22670 29.032 5.31e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04573 - - tpra:123914815 134.806