Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04572 ATGAGTGAGACATTAACCCACTTGCACCAAGAACGTGAAAGGAGTGAATTTGAAACTACAAGAGTTTGGGCTAGCATGGAACATTATAGACAAGATGAACAAGTTGATATTTTTTATGGTAAAAGAGGAAAGATTGCTAGGTTGATGATAAGAGTGTTGCCACCGGTTAAAATCTTCGATGAAGATGAAACTAGTGATTGTTCTATTTGCATGGAAGAATTTAAGAAAGGGGAGTTGATTCAACCTTTTGTTTTATGTGCACATGAATTTCATTATTCATGCATCAATTCTTGGTTACTTGGAGGAAAAACAAATTGTCCTATTTGTCGTCAAGATTTATCAACTACAGTTACATCCACATAA 363 0.3471 MSETLTHLHQERERSEFETTRVWASMEHYRQDEQVDIFYGKRGKIARLMIRVLPPVKIFDEDETSDCSICMEEFKKGELIQPFVLCAHEFHYSCINSWLLGGKTNCPICRQDLSTTVTST 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04572 120 ProSiteProfiles Zinc finger RING-type profile. 67 110 IPR001841 -
Trre12g04572 120 SUPERFAMILY RING/U-box 51 115 - -
Trre12g04572 120 Pfam Ring finger domain 66 110 IPR001841 -
Trre12g04572 120 SMART ring_2 67 109 IPR001841 -
Trre12g04572 120 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 113 IPR044675 -
Trre12g04572 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04572 Trre-Chr12 59870290 59870652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04572 45 116 C3H Transcription Factor Family AT1G22670 31.579 4.09e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04572 - K22378 tpra:123914815 119.783