Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04571 ATGACTCGGCGGTGCTCTCACTGCAGCAATAACGGCCATAACTCACGGACATGTCCGTCTAGAGGAGGCGGCGGTGGCGGAGGAGGGGTTAAGCTTTTCGGAGTTAGATTAACCGATGGATCAATCATTAAAAAAAGCGCGAGTATGGGAAACCTTAACCTCGCTGCACTTCACCATTGTTCTTCTTCTTCTTCGCTTAATCCTGGTTCATCGATTAATCCCGGTTCACCTTGTTCTGAACCGCATAATGACCCCGACGGTTATTTATCTGATGATCCGGCTCATGCTTCTACCTTCGCCTCCCGTCGCGGCGAGAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGATTGTTCTTGGTTGGTCTCCATAAGCTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAGAAGTACTTTATCCGGCAGAGTAATGCTACTAGGAGAAAGAGGCGTTCCAGCCTTTTTGACATGGCTCCAGATATGTGTCCTGATTCAACTTTGATGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAACCTTGCAATGGAAAATCACAGCCATCACTAAATCTCACTCTCAAGTCAGAATATGAGCCGATGGAAACTACATCTGAAGAAAATACAGAAGAGGGCAATGAAACTACAATGGGATTGACACCAATGACTCATGGATTCTTCCCATCGTATGTACCTGTCCCATTTTCAATATGGCCATCAATTGGAGCTCCATTTGAAGAAGTCAACGGAGGAGAGACATCTCATCATAGTCATCATCAGGTTCTCAAGCCGATACCAGTCATTCCAAAGGAACCTGTAAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATTGGGGAAACACAGGTACATGATAGAGAGCCTTCTCCGCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATACAAATGCTCCAGTTGGTGGTAATTCTGATCTAAACAGTGGCAAAAACAGTGCCATTCAAGCAGTTTGA 1068 0.456 MTRRCSHCSNNGHNSRTCPSRGGGGGGGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHCSSSSSLNPGSSINPGSPCSEPHNDPDGYLSDDPAHASTFASRRGERKKGVPWTEEEHRLFLVGLHKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMCPDSTLMPEEQVLLPPSENSQPCNGKSQPSLNLTLKSEYEPMETTSEENTEEGNETTMGLTPMTHGFFPSYVPVPFSIWPSIGAPFEEVNGGETSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVHDREPSPLSLKLLGEPSRQSAFHTNAPVGGNSDLNSGKNSAIQAV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04571 355 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Trre12g04571 355 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Trre12g04571 355 FunFam transcription factor MYB1R1 110 161 - -
Trre12g04571 355 SMART sant 108 158 IPR001005 -
Trre12g04571 355 MobiDBLite consensus disorder prediction 65 110 - -
Trre12g04571 355 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Trre12g04571 355 CDD SANT 111 156 IPR001005 -
Trre12g04571 355 Gene3D - 110 161 - -
Trre12g04571 355 PANTHER TRANSCRIPTION FACTOR KUA1 3 286 - -
Trre12g04571 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Trre12g04571 355 MobiDBLite consensus disorder prediction 1 18 - -
Trre12g04571 355 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g04571 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Trre12g04571 355 MobiDBLite consensus disorder prediction 334 355 - -
Trre12g04571 355 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04571 Trre-Chr12 59848177 59851186 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g04571 Myb_DNA-binding 6.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04571 - - gmx:778036 540.036