Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04564 ATGAATGAAATGACAAGAAATGAAAGAGAATCTTCAGAAGAAAGGAAGCTTGAGCTAAGACTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCAACAACAAACAAAGAGATTATGATTATGATTATGAGTCTAAACTCTCACTTGGTACTACTAATTACTTCTCAAACACAAACACAAAAAATGGTAGTTTTCAACAAACCAAGAATCATCTTCATTTCCCATCAAACAAGAGAGGTAAAGAATCATCATCATCACAAACATGTTGTCCTAAATCAGTAGAGTTACAGAATGGTGATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTGGGTTGGCCACCAATTCGTTCATTCAGAAAGAATCTTGCAACAAGCAGCAATTCTTCTAAGCCATCATCACCACCTGAATCACATACTCAACAACATAACAAGGTTGCTGGTAAAAAACCTATTGACAATTATGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGTGTTCCTATTGGTAGAAAAATTGATCTTAATGCTTATCATAGCTATCAAAATCTTTCCACAGCTGTGGATGAGCTCTTTAGAGGACTACTTAAAGCTCAACGAGATTCCTCTGCTTGTAACAAGGAAGAGGAAGAGAAAGTGATTAGTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACTGAGCTTTCTGCTTTTACACTTGGCACTAAGCAAGACAAGATACCTACTTGA 858 0.3776 MNEMTRNERESSEERKLELRLAPPGVENWFHTNNKQRDYDYDYESKLSLGTTNYFSNTNTKNGSFQQTKNHLHFPSNKRGKESSSSQTCCPKSVELQNGDNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSNSSKPSSPPESHTQQHNKVAGKKPIDNYGKGLFVKINMDGVPIGRKIDLNAYHSYQNLSTAVDELFRGLLKAQRDSSACNKEEEEKVISGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTKQDKIPT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04564 285 MobiDBLite consensus disorder prediction 129 156 - -
Trre12g04564 285 MobiDBLite consensus disorder prediction 60 115 - -
Trre12g04564 285 FunFam Auxin-responsive protein 162 280 - -
Trre12g04564 285 Pfam AUX/IAA family 17 272 IPR033389 -
Trre12g04564 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 271 IPR003311 GO:0005634|GO:0006355
Trre12g04564 285 Gene3D - 162 280 - -
Trre12g04564 285 SUPERFAMILY CAD & PB1 domains 163 265 - -
Trre12g04564 285 ProSiteProfiles PB1 domain profile. 167 268 IPR000270 GO:0005515
Trre12g04564 285 MobiDBLite consensus disorder prediction 60 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04564 Trre-Chr12 59764992 59768473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04564 171 279 B3 DNA Binding Superfamily AT4G23980 33.945 1.60e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre12g04564 AUX_IAA 1.8e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04564 K14484 - gmx:100804593 347.436