Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04563 ATGGGAAAAGCTTCTAGGTGGTTAAAGGGGTTGTTTGGAATGAAGAAAGAGAAGGAACATAGTAACAAATCAGGGCCATTGGTTTTTGACAAGAAGGAGAAGAAAATATCAGTGAAAGATGATAATCACATTGATCATCAGAATCAAATTTCTCAAACCAATGCTGCAGAATTTGATGCTAATGCTTGGTACAGATCCTATGTTGCTGAAAAACAGAATGAGCATAGAAAAAATGGAATTTTGCTGAGGTCATTAAGCCATGGCAGTGGCAGATTGTTTATTGGAAGCAGGGAGAAGTTGGCTGTTGTAAAGATCCAAACTTTTTTCAGAGGATATTTGGCGCGAAAGGCTCTTAGAGCGCTAAAAGCACTTGTTAAGATACAAGCTCTTGTTAGAGGATATCTAGTTCGAAAAAGGGTTGCTGCAACACTTCACAGTATGCAAGCTCTCATGAGAGCTCAAGCTGTTATCCGGTCAAGGCGAGCTCGTAATTCCATCGACAAGGAGAACATATATCAGTCAGAAATCCGTGGGCGAAAACATGTGCAAACATTTGATGAAACTAGAAATGAACAACACAATAAATGGCTTCCAAATTCGTCAAGTAAATTTGCTCCGAACCCGAAAATTGTTGTGGTTGATCCTTACAAGTCTCGTTCGAGATCTACAATGTCTGAATCTGGAGATGATCTGCATGATTACTATGAAGCAACATCATCCACTCTTCCTTATCCAATTCCGCGTCGAATTTCAGTTCATGAATGCCAAAATTCTCAATATTTTGATTGGTCCGTCGATAATGTTAACAATGAACGTAAGTTCAACACGGCTCATAGCACTCCTAGATTAGCCAATTTTTTGCAAGCTAATAGTCTGGAGAAGAGTGTTTCTGGAGAGACCGGCTTGTTCTTGCCTTACGGCAATTTTCCTAACTACATGGCTAATACTCATTCATCTAAGGCAAGAGTAGTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAGCTGAAGAAAAGGGTTCCGCTTGATGAAATCATGGCCAAAAGAAATAGCATAAGTTGTGTTAGAATGCATTGGTAA 1080 0.3981 MGKASRWLKGLFGMKKEKEHSNKSGPLVFDKKEKKISVKDDNHIDHQNQISQTNAAEFDANAWYRSYVAEKQNEHRKNGILLRSLSHGSGRLFIGSREKLAVVKIQTFFRGYLARKALRALKALVKIQALVRGYLVRKRVAATLHSMQALMRAQAVIRSRRARNSIDKENIYQSEIRGRKHVQTFDETRNEQHNKWLPNSSSKFAPNPKIVVVDPYKSRSRSTMSESGDDLHDYYEATSSTLPYPIPRRISVHECQNSQYFDWSVDNVNNERKFNTAHSTPRLANFLQANSLEKSVSGETGLFLPYGNFPNYMANTHSSKARVVRSHSAPKQRPELKKRVPLDEIMAKRNSISCVRMHW 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04563 359 SMART iq_5 97 119 IPR000048 GO:0005515
Trre12g04563 359 SMART iq_5 120 141 IPR000048 GO:0005515
Trre12g04563 359 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Trre12g04563 359 Pfam Protein of unknown function (DUF4005) 280 353 IPR025064 -
Trre12g04563 359 PANTHER IQ-DOMAIN 5-RELATED 1 345 - -
Trre12g04563 359 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Trre12g04563 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 141 IPR027417 -
Trre12g04563 359 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Trre12g04563 359 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Trre12g04563 359 Gene3D - 61 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04563 Trre-Chr12 59739216 59740992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04563 1 357 IQD Protein Family AT3G16490 38.861 2.43e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04563 - - gmx:100797686 341.273