Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04551 ATGGATAGTCTTAGTTGGAATGATGACTCACAACTTATTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGAAAGAGACTATTCAATGTCCAATCCAAGCTCAAATGTTTTTAATTATCAAATGCAAGATATGCAGAAGATTCAATCAGGAGCTGAAAACAATTGGGAAGAAACTTTAATATTCCAATCATACCCTTCTTCACTTTCAGTCAATATCAACACACCTAACAATTATTTACCAGATTTCAACATGTCCCATCAACAAAATAGCAAGAGTACTATTTCATGCTCTCTTGAATCATCACTTGAGTGTTTGCTTTCAGCAACTACTAATAGTAACACTGACACTAATTCTATTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAATTCATGGAACTTCAGTGCAGTTTCCTCTGTTGAATCAATTAATGCTACAAACAAAGACATGCAGTATCCATTCAAGGAAATAGAGGAAACATTATCTCAAGGTAAAATCATTGATTCTAATTCCAAGGTTCATTCCACAAAAAGGACTAAGATTGATGAATATGATCCTTATAACTTCAGTATTACTCAGAATTCTTCTGCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCATGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCGGTATCATTGTCAAATTCATCCATTCATGAAGAGCCTGATCCAGAAGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCGGCTTTTAGGCCAGTGATGAATTTAGGTTTGGAAGTGGTGGAAAAGCCTAAAAGAAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAAAGAATAAGCGAAAGGATTCGAGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGGTCACAAGTTAAAGCACTAGAGAATCTTGGAAACAAGATTGATACAATGAAGAATTGTCCTTCTACAAACATAGCTTTCTCTTTCAACCCTTCAATTCCCATGCAAAGTACTCATTTTCCCATCCAAAACCCTAATGACAACATCCAATATTCTCGGGGTTGA 1197 0.3584 MDSLSWNDDSQLIANIPILWNTQPQDLERDYSMSNPSSNVFNYQMQDMQKIQSGAENNWEETLIFQSYPSSLSVNINTPNNYLPDFNMSHQQNSKSTISCSLESSLECLLSATTNSNTDTNSIQDDGISMIFSDCKNRNSWNFSAVSSVESINATNKDMQYPFKEIEETLSQGKIIDSNSKVHSTKRTKIDEYDPYNFSITQNSSATEFGFKLISEKPPKSKKPRWDNKCHGSSNINFQQPNSSVSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVVEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMKNCPSTNIAFSFNPSIPMQSTHFPIQNPNDNIQYSRG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04551 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 354 IPR036638 GO:0046983
Trre12g04551 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Trre12g04551 398 SMART finulus 301 350 IPR011598 GO:0046983
Trre12g04551 398 FunFam BHLH transcription factor 298 362 - -
Trre12g04551 398 Coils Coil 334 354 - -
Trre12g04551 398 MobiDBLite consensus disorder prediction 232 253 - -
Trre12g04551 398 Gene3D - 300 364 IPR036638 GO:0046983
Trre12g04551 398 Pfam Helix-loop-helix DNA-binding domain 305 344 IPR011598 GO:0046983
Trre12g04551 398 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 89 394 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04551 Trre-Chr12 59656454 59657650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04551 31 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.333 1.04e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g04551 HLH 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04551 - - gmx:100793830 421.779