Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04548 ATGGCAGGACACTTGCTATGTCTACTTATAATGTTTTTACTTTCTTTAACTCCTCCTTTCATTGTTCATGCCCAGAACAACCAATTAGGATTCATTAGTATTGACTGTGGGTTAGTAGATAAACCAAGCTACACAGATGAAACTACTTCCATCTATTATACATGGGATGTTAACTTCACAGATACTGGTGTAAGTAAAAGCATATCATCTAAACACAAAGCTTCCCTTGAAAAACAGTTTTGGAATGTTAGAAGCTTCCCAAAAGGAACAAGGAACTGCTACACCCTTTTTGTTTCACAAGGAAGTAGCAAAAAATATTTAGTCAGGGCCAGTTTTGTGTATGGTAATTATGATGGAAAAAACACTCTTCCTGAATTTGATATCTATCTTGGAGCTAAATGGTGGGAATCTGTAGTGTTTGAAGATTCATCTAGTGTAATAACCAAGGAAATCATTTTTGCTACTTCCTCAGATTATGTTCATGTTTGTTTGTTTAATACTGGCAAGGGTACACCTTTTATTTCAGTTTTAGAGCTTAGAGTTCTAAACAGTGATGCTTATCTTGTTAACTCTTTGGAGCTTTTGGGGAGGTTTGATGTAGGCTTACAGGGTAGTCAAAAAATCAGATATCCAGATGATATTTATGACAGAACATGGACACCTTATAACTCAAATGACTGGAAAATGGCAAATACTTCACTCACCATAGACCAAGGAGCACCTTCATTCAACTTTTTACCACTACCACCTTCCACTGTCATGAGAACAACATCAATTCCAGAAAATGTTAGTGACAAGATAGAATTTCACTTCCTTCCCAAGTATAATGCCTCTAGATATTATGTGTACATGTACTTTGCTGAAATCCAGAAACTCGAGGCGAATCAAATTAGAGAGTTTAACATTTTTGTAAATGGAAAGCTTTTAAATAATGATCCACTAATTCCTTTGTATCTTCAAAGCCAGTATTATATATCAGTTATAGATGAAAATAAGTTGGAACTTTGGTTTAATAAGACTAATAGATCAACTCTTCCACCACTTTTCAACGCAATCGAGATATATATGACAAAGGACTTCTTACAATCAGAAACATATCAAATGGACGTTGATGCTATCCTAAATGTGAAGTCAATTTATGAGATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGGAAGGTCTAAACTGCAGCTATGCCGAATCTAATTCACCAAGGATCGTATACTTGAACTTAACTTCTAGCGGTTTAATTGGAAATATAGCTCCTGGTATATCCAATCTGAAATCAATAGAATATTTGGATTTGTCGAATAACGGTTTGACTGGAGCTGTGCCTGATTTCCTATCTCAGCTGCGCTTCTTGCGAGTTCTAAACCTTGAAGGAAATCAGTTATCTGGCGCAATTCCAATGCAACTCCTCGTGCGTTCAGAGAATAGTATGCTCAAATCCAATTTTGGTGGAAATCCAAATCTTTGCTCCTCAGGTTCATGTAACAAGATGAATAAGGTTGTATTTCCATTAGTAGCATCACTTGGTGGTGCTTTCATGATATTAGCAGTAGCAATGATTTCTTTTCGCATATACTACAAGAGACACCAAGTTTCCCATCATGTGAGCAAGATGGGTGGTTATTCAAGAATAAAGCAGGAACTAGAGTCAAAGAAACAAGAATTCACCTATGAAGAAGTATTAACCATTACCAGAAACTTTGAAAAGGTTGTGGGGAAAGGAGCATCTGGAACAGTCTATCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGCTATCTTCCGAATCAGCTCAAGGATATATGCAATTTCAAGCAGAGGCCAAACTTTTTGCCGTAGTTCATCATAAATACTTGACTGGTCTTATAGGGTACTGTGATGATGGCACCAACATGGCTCTCATCTATGAGTATATGGCTAATGGAGACTTAGCCAAGCATTTATCAGATAAAAGTGAACATATATTGAGTTGGAATCAACGACTTCAAATTGCGGTGGATGCTGCAGAAGGATTGGAGTATCTGCATCATGGCTGCAATCCGCCAATTGTTCATAGAGATGTTAAATCTAAAAACATCTTACTAAATGACAAATTCCAAGGTAAACTAGCTGATTTTGGGTTGTCAAAGATCTTTCCTAACGAAGGCGACACTCATATCTTCACGGTTGTTGCTGGAACTATAGGATACCTCGACCCTGAGTACAATAGATTAAGCAGGTTGAAAGGAAAAAGTGATGTTTTTAGTTTTGGAGTAGTTTTGCTTGAGATAATTACAGGACAACCTGCCATAACCAAAACTGAAGAGAAAATCCATATTATTCAATGGATTAGTTCTATGCTGCTGGAAAGAGAGGTAAAGGATATTGTGGATCCCAGATTAAAGGGAGAATTTGATATTAACTATGCAACTAAAGCTTTGGATATTGCAATGGCTTGTGTAGCAAAAACTTCAATCAATAGGCCAACCATGAGGCAAGTAGTTATGGAACTCAAACAATGTTTGAAGAACAAGATCACTGATTTGTCTGACTCTGATTACACTCCTGAGAGTTTACCAGACACCTTTAATTCTGTATCTTTCGACAAAATTAGTGGCGAGAGCTCTCTAGCGAGGTAG 2655 0.3718 MAGHLLCLLIMFLLSLTPPFIVHAQNNQLGFISIDCGLVDKPSYTDETTSIYYTWDVNFTDTGVSKSISSKHKASLEKQFWNVRSFPKGTRNCYTLFVSQGSSKKYLVRASFVYGNYDGKNTLPEFDIYLGAKWWESVVFEDSSSVITKEIIFATSSDYVHVCLFNTGKGTPFISVLELRVLNSDAYLVNSLELLGRFDVGLQGSQKIRYPDDIYDRTWTPYNSNDWKMANTSLTIDQGAPSFNFLPLPPSTVMRTTSIPENVSDKIEFHFLPKYNASRYYVYMYFAEIQKLEANQIREFNIFVNGKLLNNDPLIPLYLQSQYYISVIDENKLELWFNKTNRSTLPPLFNAIEIYMTKDFLQSETYQMDVDAILNVKSIYEIKRNWQGDPCTPVSYLWEGLNCSYAESNSPRIVYLNLTSSGLIGNIAPGISNLKSIEYLDLSNNGLTGAVPDFLSQLRFLRVLNLEGNQLSGAIPMQLLVRSENSMLKSNFGGNPNLCSSGSCNKMNKVVFPLVASLGGAFMILAVAMISFRIYYKRHQVSHHVSKMGGYSRIKQELESKKQEFTYEEVLTITRNFEKVVGKGASGTVYHGWIDHDTEVAVKMLSSESAQGYMQFQAEAKLFAVVHHKYLTGLIGYCDDGTNMALIYEYMANGDLAKHLSDKSEHILSWNQRLQIAVDAAEGLEYLHHGCNPPIVHRDVKSKNILLNDKFQGKLADFGLSKIFPNEGDTHIFTVVAGTIGYLDPEYNRLSRLKGKSDVFSFGVVLLEIITGQPAITKTEEKIHIIQWISSMLLEREVKDIVDPRLKGEFDINYATKALDIAMACVAKTSINRPTMRQVVMELKQCLKNKITDLSDSDYTPESLPDTFNSVSFDKISGESSLAR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04548 884 FunFam Leucine-rich repeat receptor-like kinase 368 501 - -
Trre12g04548 884 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Trre12g04548 884 Gene3D Phosphorylase Kinase; domain 1 556 650 - -
Trre12g04548 884 Gene3D Ribonuclease Inhibitor 370 491 IPR032675 -
Trre12g04548 884 PANTHER OS07G0107800 PROTEIN-RELATED 32 847 - -
Trre12g04548 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Trre12g04548 884 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Trre12g04548 884 ProSiteProfiles Protein kinase domain profile. 575 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04548 884 SUPERFAMILY L domain-like 371 498 - -
Trre12g04548 884 Pfam Malectin-like domain 34 356 IPR024788 -
Trre12g04548 884 SMART serkin_6 575 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04548 884 SUPERFAMILY Protein kinase-like (PK-like) 560 843 IPR011009 -
Trre12g04548 884 Gene3D Transferase(Phosphotransferase) domain 1 651 863 - -
Trre12g04548 884 Pfam Protein kinase domain 578 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04548 884 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 651 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04548 Trre-Chr12 59638361 59643189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04548 7 847 Receptor kinase-like Gene Family AT2G19210 48.075 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre12g04548 Malectin_like 3.5e-100 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04548 - - psat:127087401 1498.41