Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04543 ATGGCAACAGTACCTGGTCCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCATTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAATTCAGCAGAGAGCCAAACAATCTCTACAACCTCAACTCCTTCAAATACTCTGGTTTGGCCAACAAGAAAACAGTAACTATTCAAGCTGCTGGTAAAGATCAGTCTGTATTGTTGGCAACCACCAAGCCAAGGAAGCAGAACAAGCCTGCAGCTTTGCTTCACAAATCTGTGATGAAGAAGGAGTTCAGGAGGATGGCAAAGGCTGTGCAGAATCAGGTGGCAGATAACTACTACAGACCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGTGCTGTCAACAGAAGCCTCAAAGTTGCAAAGTCTGGTGCAAAGAAGAGAAACAGACATGCTTGA 432 0.4421 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSFKYSGLANKKTVTIQAAGKDQSVLLATTKPRKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGAKKRNRHA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04543 143 Gene3D - 7 133 - -
Trre12g04543 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 142 IPR002672 GO:0003735|GO:0005840|GO:0006412
Trre12g04543 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Trre12g04543 143 FunFam 60S ribosomal protein L28 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04543 Trre-Chr12 59622942 59625167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04543 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 1.22e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04543 K02903 - gmx:100500189 257.299