Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04542 ATGGATTGGTTAGTGAATCGTTGGACTGGTGTTGCTGCAGCAATCTGGATCCAGTGGAGCTGTGGTGCATCATACACCTTCAGCATCTACTCTCCTCTCCTCAAATCCACACAAAACTACAACCAATCAACGCTCGACACCGTCTCCGTCTTCAAAGACATTGGCGCCAACTTCGGCGTCCTCTCCGGCCTCCTTTACTCCGCCGTCACACCTTACGGTGACCGCCCACTTCCGTCCAATAAGTCTAAATGGAGTTCCCTTGGTGGGCCTTGGATTGTTGTGGCTGCAGGTGCTGTTCAGATCTTTGTGGGCTTTTTCTTCATTTGGGCTTCTGTTATGGGCTTGATCCATCAGCCTCCTGTTCCAGTCATGTGCTTTTTTGCTTGGCTTGCTGCTAATGGTCAGGCTTTTTTGAATACTACTAATGTTGTTACTGGGTTGCGTAATTTTCCTCAATATAGTGGCACCATCATTGGTATCATGAAGGGTTTTCTTGGGCTTAGTGGAGCTATCTTGATTCAACTGTATCACACATTTTTCGATGGTGACCCAGCTACCTTTCTTCTGATGCTAGCTTGCTTACCTGCAATCATCTCTGTGTTATTTATGTTTCTGGTGAGGATCTATGAAGTGCAAGACTGTGATTACAAGAAGCATTTAGATGATTTCTCTGTGGTCACTGTCATTATTGTTGGGTATCTCATGTTCATAATAGTTTTACAAAACGTCGGGAGCTTACCATATTGGGCACGAGTTTTTACATTTGTGGTCCTTATGGTTCTACTAGCATTGCCTTTTGGCATTGCCATAAAAGCTCAATGGGAGGACTCAAGGATATTTTCACATGCTCCCTCCATTGAGACGGCTGCGCCTTCAATAGAATACCAAGAGCTGCCTAGAGAGGAGGTGCAAGTACAGGACATGTCAGGTGATGTGTTGCCCCTTGAACAAGAAATGAACCTATTACAAGCTATGTGTACTGTTGAGTTTTGGATGTTGTTTGTAACCATGATAGCCGGTTTGGGTTCTGGGCTTTCGATGATAAATAATATGAGCCAGATAGGAGAATCTCTTGGGTACAGTGCTATTGAGATCGGCAATATGGTGTCATTATGGAGTATGTGGAATTTTCTTGGCCGTTTTGGTGGCGGTCGTGTATCCGATTATATCATGCACAAAAAAGGTTGGCCACGGCCCCTGTTGTTGACTGTAACTCTGGGATTTTTAATCATAGCTTCTGGTTTTCCTGGAAATTTTTATTTGGGTCCTGTCCTGGTGGGAATATGCTATGGTACAAATTGGTCCTTAATGCCAACAATCACTTCTGAGATATTTGGTGTGAAGCACATGGGTACCATTTTCAACACTATTGCTGCATCAAGTCCACTTGGGTCTTATATCCTTTCTGTGAGAGTTGTTGGATATATATATGACAAGGAAGCCAATAAAGAAGATAACTCATGCTTCGGCATCCACTGTTTCATGTTGTCGTTTCTGATCCTGGCTGGTGTGACTTTTCTAGCATTTTTGGTCAGTCTGGCGTTGTATTTCCGGACCCGAAGATTCTATAAGCTAGTTGTGCTTAAAAGATTAAAACATTATGCACCATGA 1611 0.4358 MDWLVNRWTGVAAAIWIQWSCGASYTFSIYSPLLKSTQNYNQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYGDRPLPSNKSKWSSLGGPWIVVAAGAVQIFVGFFFIWASVMGLIHQPPVPVMCFFAWLAANGQAFLNTTNVVTGLRNFPQYSGTIIGIMKGFLGLSGAILIQLYHTFFDGDPATFLLMLACLPAIISVLFMFLVRIYEVQDCDYKKHLDDFSVVTVIIVGYLMFIIVLQNVGSLPYWARVFTFVVLMVLLALPFGIAIKAQWEDSRIFSHAPSIETAAPSIEYQELPREEVQVQDMSGDVLPLEQEMNLLQAMCTVEFWMLFVTMIAGLGSGLSMINNMSQIGESLGYSAIEIGNMVSLWSMWNFLGRFGGGRVSDYIMHKKGWPRPLLLTVTLGFLIIASGFPGNFYLGPVLVGICYGTNWSLMPTITSEIFGVKHMGTIFNTIAASSPLGSYILSVRVVGYIYDKEANKEDNSCFGIHCFMLSFLILAGVTFLAFLVSLALYFRTRRFYKLVVLKRLKHYAP 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04542 536 SUPERFAMILY MFS general substrate transporter 229 521 IPR036259 -
Trre12g04542 536 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 524 - -
Trre12g04542 536 Gene3D MFS general substrate transporter like domains 321 525 IPR036259 -
Trre12g04542 536 Pfam Major Facilitator Superfamily 333 521 IPR011701 GO:0022857|GO:0055085
Trre12g04542 536 SUPERFAMILY MFS general substrate transporter 4 207 IPR036259 -
Trre12g04542 536 CDD MFS_Mch1p_like 7 508 - -
Trre12g04542 536 Pfam Nodulin-like 7 68 IPR010658 -
Trre12g04542 536 Pfam Nodulin-like 90 269 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04542 Trre-Chr12 59616150 59618485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04542 1 533 Nodulin-like Gene Family AT1G74780 56.007 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04542 - - gmx:100775628 863.218