Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04541 ATGAATTGGTTAACAAATCGTTGGACCGGCGTCGCCGCCGCAATATGGATCCAATGGAGCTGCGGTGCATCATACACTTTCAGCATTTACTCACCTCTCCTCAAATCCACACAAAACTATTCCCAATCAACGCTCGACACCGTTTCCGTTTTCAAAGACATCGGAGCTAACTTCGGTGTTCTTTCCGGTCTCCTTTACTCCGCCGTCACACCTTACGGTGATCGCCAACCGCAGTCTAAATGGAGTTCTTTTGGTGGGCCTTGGATTGTTGTTGCTGCAGGTGCTGTTCAGTGTTTTGTGGGCTTTTTCTTTATCTGGGCTTCTGTTGTGGGCTTGATTCATCAGCCACCTGTTACTTTAATGTGTTTTTTCGCTTGGCTTGCTGCTAATGGACAAACTTTCTTGAATACTACTAATGTTGTTACTGGGTTGCGTAATTTTCCTCAATACAGTGGCACCATCATTGGTATCATGAAGGGTTTTCTTGGGCTTAGTGGAGCTATCTTGATTCAACTGTATCATACATTTTTTAAGGGTGACCCAGCCACCTTCCTTCTGATGCTAGCTTGCTTACCTGCAATCATCTGTGTGTTGTTTATGTTTCTGTTGAGGATCTATCAAGTGCAAGCCTATGATTACAAGAAGCATTTGGATGATTTCTCTGTGGTCACTGTCATTATTGTTGTGTATCTCATGTTCATAATAGTTTTGCAGAATTTTGTGAGCTTACCGTATTGGGCACGGGTTTTTACATTTGTGGTACTTATGGTTCTATTAGCATCGCCTTTTGGCATTGCTGTAAAAGCTCATTGGGAGGATTCGAGGATATTTTCACAAGCTTGCTCCAGGGAGACTGCTGCTCCTACAATAGAATACCAAGCGCTGCCTAGAGAGGAGGTGCAAGTGCGTAATACTTTAGATGATGTGTCGCCCCTTGAACAAGAAAAGAACCTATTACAAGCTATGTGTACTGTTGAATTTTGGATGTTGTTTGTGACCATGATATCTGGTTTGGGTTCTGGGCTGGCAACAATAAATAATATGAGCCAAATAGGACAATCTCTTGGGTATAGTACTATTGAGATTAGCAATATGGTGTCACTGTGGAGTATGTGGAATTTTCTTGGCCGGTTTGGTGGTGGCCATTTATCCGATTATATCATGCATAAAAGAGGTTGGCCGAGGCCCCTGCTGATGACTGTAACTCTGGGGATTATGATTCTTGGTCATTTAATCATAGCTTCTGGTTTCCCTGGAAATTTTTATTTGGGTCCTGTTCTGGTGGGAATATGCTATGGTACAAATTGGTCCTTAATGCCAACAATCACTTCTGAGATATTTGGTGTGAAGCATATGGGTACCATTTTCAACACTATTGCTGCATCAAGTCCACTTGGGTCTTATATACTTTCTGTGAGAGTTGTTGGATATATATATGACAAGGAAGCTAATAAAGAAGATAACTCATGCTTCGGCATCCACTGTTTCATGTCGTCGTTTCTGATCCTTGCCGGTGTGGCTTTTCTGGCATTTTTGGTTGGTCTGGCGTTGTATTTCCGGACCCAAAGGTTCTATAAGCAAGTTGTGATTAGAAAATTAAACTATTATGCGCGATGA 1617 0.423 MNWLTNRWTGVAAAIWIQWSCGASYTFSIYSPLLKSTQNYSQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYGDRQPQSKWSSFGGPWIVVAAGAVQCFVGFFFIWASVVGLIHQPPVTLMCFFAWLAANGQTFLNTTNVVTGLRNFPQYSGTIIGIMKGFLGLSGAILIQLYHTFFKGDPATFLLMLACLPAIICVLFMFLLRIYQVQAYDYKKHLDDFSVVTVIIVVYLMFIIVLQNFVSLPYWARVFTFVVLMVLLASPFGIAVKAHWEDSRIFSQACSRETAAPTIEYQALPREEVQVRNTLDDVSPLEQEKNLLQAMCTVEFWMLFVTMISGLGSGLATINNMSQIGQSLGYSTIEISNMVSLWSMWNFLGRFGGGHLSDYIMHKRGWPRPLLMTVTLGIMILGHLIIASGFPGNFYLGPVLVGICYGTNWSLMPTITSEIFGVKHMGTIFNTIAASSPLGSYILSVRVVGYIYDKEANKEDNSCFGIHCFMSSFLILAGVAFLAFLVGLALYFRTQRFYKQVVIRKLNYYAR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04541 538 CDD MFS_Mch1p_like 7 510 - -
Trre12g04541 538 SUPERFAMILY MFS general substrate transporter 4 204 IPR036259 -
Trre12g04541 538 SUPERFAMILY MFS general substrate transporter 246 523 IPR036259 -
Trre12g04541 538 Gene3D MFS general substrate transporter like domains 325 532 IPR036259 -
Trre12g04541 538 Pfam Nodulin-like 7 266 IPR010658 -
Trre12g04541 538 Pfam Major Facilitator Superfamily 330 523 IPR011701 GO:0022857|GO:0055085
Trre12g04541 538 ProSiteProfiles Major facilitator superfamily (MFS) profile. 325 538 IPR020846 GO:0022857
Trre12g04541 538 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04541 Trre-Chr12 59613217 59615526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04541 1 535 Nodulin-like Gene Family AT1G74780 55.904 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04541 - - gmx:100775628 878.626