Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04533 ATGAGTCGAGAACAACAGAAGCGAGGGAAGCATGAAAAAAGTTGTGATGGTGCTAAGAAGGTTATTGTTGCTGTCAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTAACTCATGTTGTTCAACCTGGTGATTGCATTACACTACTAGTGGTTGTACCTTCACAAAGTTCAGGCCGAAAATTATGGGGTTTTCCGAGGTTTGCTGGTGACTGTGCTAATGCACACAAGAAGTCAACAATACTGGGAGCTAGTTCAGAGCACAAGAATGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCACGATGTCTATGATCCAAATAAGATAAATGTCAGGATAAAAATTGTTTCTGGATCACCTTGTGGAGCGGTGGCTGCAGAAGCCAAGAAAGCTCAAGCCAATTGGGTCGTCTTTGATAAACATCTCAAGCAAGAAGAAAAACAATGCATGGAAGAGCTTCAGTGTAACATTGCGGGTATGAAGGGTTCCCAACCGAAGGTACTCCGCTTCAATTTGGTAGGATCGCAAAAGAAGGATCTTGAAGAAACTTGTCCATTACCTTCTGAGCAGCACGATATGCCTGGAAAACAATCCAAGAAGAAGAATGGTTCTTTGAAATCTACAATAGGACAAGTTGTCACGCCAACTAGCAGCCCCGAGTTAGAGACATCATTTACTGCAACTGAAGTTGGAACTTCATCGGTTTCAAGCTCCGACCCTGGAACTTCCCCGTTTTTTGTCTCCGAAATCATTGCCGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCAAGAAACTGATGGTACTATCTCTGACACAGACAGTGAAAATTTGTCCACATCTTCAGCAAGCTTGCGATTTCAGCCGTGGGTTACAGATCTATTTTTGCATAAACAATCATCTCAACGTGAAGAAGAAAGGTCAGAGAGTTCTCGTTCTCATGATAGGCTTGAAGCGTCTACAGCTAGAGCTTTGCTAGAAAAGTTCTCCATGCTTGATAGAGAAGCCGAAATGGAAACCTCGACCTTTAAGACTGACTTGGAATTCAGTGGAAGCATAAGAGAAGTGGTATCATTATCTAGAAATGCCGCACCTGGTCCACCTCCATTATGTTCAATATGTCAACACAAGGCTCCAGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTAGCTACTTGTGGATTTTCACCGGACAATTTCTTGGCAGAAGGAGGATATGGATCTGTTCACAGAGGAGTTCTACCAGAAGGGCAAGTTATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAATTCTGCTCAGAGGTTGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGTTGATCGGGTTCTGTATAGAGGATAAGAGAAGGTTATTGGTTTATGAATACATATGCAATGGATCATTGGATACTCATCTATATGGGAGACAACGGAAACCATTAGAATGGTCTGCACGTCATAAAATTGCCGTTGGTGCTGCTCGAGGTTTGCGATATCTTCATGAAGAGTGCAGAGTGGGATGCATCGTCCACCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACTGGAGTCGAAACTAGAGTTATTGGGACATTTGGGTATTTGGCTCCCGAATATGCTCAAAGTGGACAAATAACTGAAAAGGCCGATGTTTATTCTTTCGGAGTGGTATTAGTGGAGCTTGTGACAGGTCGTAAAGCTGTGGATATCAACCGGCCCAAGGGACAGCAGTGTCTTACCGAGTGGGCACGACCACTATTAGAAGAGTATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCATTATTCAGAACAGGAGGTCACTTGCATGCTACATGCGGCATCCTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTATTGCGAATACTAGAAGGCGACACAGTCATCGAATCACCACGCCATTTCGGAGGTTCCCCTTCCCTTTGA 2085 0.4388 MSREQQKRGKHEKSCDGAKKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRKLWGFPRFAGDCANAHKKSTILGASSEHKNDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVFDKHLKQEEKQCMEELQCNIAGMKGSQPKVLRFNLVGSQKKDLEETCPLPSEQHDMPGKQSKKKNGSLKSTIGQVVTPTSSPELETSFTATEVGTSSVSSSDPGTSPFFVSEIIAESKKEETIKENQETDGTISDTDSENLSTSSASLRFQPWVTDLFLHKQSSQREEERSESSRSHDRLEASTARALLEKFSMLDREAEMETSTFKTDLEFSGSIREVVSLSRNAAPGPPPLCSICQHKAPVFGKPPRWFSYAELELATCGFSPDNFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQRKPLEWSARHKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEQEVTCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVIESPRHFGGSPSL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04533 694 MobiDBLite consensus disorder prediction 259 274 - -
Trre12g04533 694 PANTHER OS01G0750732 PROTEIN 153 681 - -
Trre12g04533 694 CDD STKc_IRAK 412 678 - -
Trre12g04533 694 MobiDBLite consensus disorder prediction 259 287 - -
Trre12g04533 694 Gene3D Phosphorylase Kinase; domain 1 378 481 - -
Trre12g04533 694 ProSiteProfiles Protein kinase domain profile. 406 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04533 694 MobiDBLite consensus disorder prediction 304 325 - -
Trre12g04533 694 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 378 481 - -
Trre12g04533 694 Gene3D HUPs 4 154 IPR014729 -
Trre12g04533 694 MobiDBLite consensus disorder prediction 188 227 - -
Trre12g04533 694 Pfam Protein tyrosine and serine/threonine kinase 411 675 IPR001245 GO:0004672|GO:0006468
Trre12g04533 694 FunFam Dual-specific kinase DSK1-like 12 167 - -
Trre12g04533 694 ProSitePatterns Tyrosine protein kinases specific active-site signature. 527 539 IPR008266 GO:0004672|GO:0006468
Trre12g04533 694 MobiDBLite consensus disorder prediction 206 227 - -
Trre12g04533 694 Gene3D Transferase(Phosphotransferase) domain 1 482 687 - -
Trre12g04533 694 SUPERFAMILY Protein kinase-like (PK-like) 390 677 IPR011009 -
Trre12g04533 694 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 482 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04533 Trre-Chr12 59531015 59534669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04533 386 679 Trihelix Transcription Factor Family AT1G70460 52.824 5.17e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre12g04533 PK_Tyr_Ser-Thr 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04533 - - gmx:100789216 1176