Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04532 ATGATGAGTCGAGAACAACAGAAGCGAGGGAAGCATGAAAAAAGTTGTGATGGTGCTAAGAAGGTTATTGTTGCTGTCAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTAACTCATGTTGTTCAACCTGGTGATTGCATTACACTACTAGTGGTTGTACCTTCACAAAGTTCAGGCCGAAAATTATGGGGTTTTCCGAGGTTTGCTGGTGACTGTGCTAATGCACACAAGAAGTCAACAATACTGGGAGCTAGTTCAGAGCACAAGAATGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCACGATGTCTATGATCCAAATAAGATAAATGTCAGGATAAAAATTGTTTCTGGATCACCTTGTGGAGCGGTGGCTGCAGAAGCCAAGAAAGCTCAAGCCAATTGGGTCGTCTTTGATAAACATCTCAAGCAAGAAGAAAAACAATGCATGGAAGAGCTTCAGTGTAACATTGCGGGTATGAAGGGTTCCCAACCGAAGGTACTCCGCTTCAATTTGGTAGGATCGCAAAAGAAGGATCTTGAAGAAACTTGTCCATTACCTTCTGAGCAGCACGATATGCCTGGAAAACAATCCAAGAAGAAGAATGGTTCTTTGAAATCTACAATAGGACAAGTTGTCACGCCAACTAGCAGCCCCGAGTTAGAGACATCATTTACTGCAACTGAAGTTGGAACTTCATCGGTTTCAAGCTCCGACCCTGGAACTTCCCCGTTTTTTGTCTCCGAAATCATTGCCGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCAAGAAACTGATGGTACTATCTCTGACACAGACAGTGAAAATTTGTCCACATCTTCAGCAAGCTTGCGATTTCAGCCGTGGGTTACAGATCTATTTTTGCATAAACAATCATCTCAACGTGAAGAAGAAAGGTCAGAGAGTTCTCGTTCTCATGATAGGCTTGAAGCGTCTACAGCTAGAGCTTTGCTAGAAAAGTTCTCCATGCTTGATAGAGAAGCCGAAATGGAAACCTCGACCTTTAAGACTGACTTGGAATTCAGTGGAAGCATAAGAGAAGTGGTATCATTATCTAGAAATGCCGCACCTGGTCCACCTCCATTATGTTCAATATGTCAACACAAGGCTCCAGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTAGCTACTTGTGGATTTTCACCGGACAATTTCTTGGCAGAAGGAGGATATGGATCTGTTCACAGAGGAGTTCTACCAGAAGGGCAAGTTATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAATTCTGCTCAGAGGTTGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGTTGATCGGGTTCTGTATAGAGGATAAGAGAAGGTTATTGGTTTATGAATACATATGCAATGGATCATTGGATACTCATCTATATGGGAGACAACGGAAACCATTAGAATGGTCTGCACGTCATAAAATTGCCGTTGGTGCTGCTCGAGGTTTGCGATATCTTCATGAAGAGTGCAGAGTGGGATGCATCGTCCACCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACTGGAGTCGAAACTAGAGTTATTGGGACATTTGGGTATTTGGCTCCCGAATATGCTCAAAGTGGACAAATAACTGAAAAGGCCGATGTTTATTCTTTCGGAGTGGTATTAGTGGAGCTTGTGACAGGTCGTAAAGCTGTGGATATCAACCGGCCCAAGGGACAGCAGTGTCTTACCGAGTGGGCACGACCACTATTAGAAGAGTATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCATTATTCAGAACAGGAGGTCACTTGCATGCTACATGCGGCATCCTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTATTGCGAATACTAGAAGGCGACACAGTCATCGAATCACCACGCCATTTCGGAGGTTCCCCTTCCCTTTGA 2088 0.4387 MMSREQQKRGKHEKSCDGAKKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRKLWGFPRFAGDCANAHKKSTILGASSEHKNDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVFDKHLKQEEKQCMEELQCNIAGMKGSQPKVLRFNLVGSQKKDLEETCPLPSEQHDMPGKQSKKKNGSLKSTIGQVVTPTSSPELETSFTATEVGTSSVSSSDPGTSPFFVSEIIAESKKEETIKENQETDGTISDTDSENLSTSSASLRFQPWVTDLFLHKQSSQREEERSESSRSHDRLEASTARALLEKFSMLDREAEMETSTFKTDLEFSGSIREVVSLSRNAAPGPPPLCSICQHKAPVFGKPPRWFSYAELELATCGFSPDNFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQRKPLEWSARHKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEQEVTCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVIESPRHFGGSPSL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04532 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 482 - -
Trre12g04532 695 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 483 686 - -
Trre12g04532 695 MobiDBLite consensus disorder prediction 207 228 - -
Trre12g04532 695 MobiDBLite consensus disorder prediction 260 275 - -
Trre12g04532 695 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Trre12g04532 695 PANTHER OS01G0750732 PROTEIN 154 682 - -
Trre12g04532 695 Gene3D Transferase(Phosphotransferase) domain 1 483 688 - -
Trre12g04532 695 MobiDBLite consensus disorder prediction 260 288 - -
Trre12g04532 695 FunFam Dual-specific kinase DSK1-like 13 168 - -
Trre12g04532 695 CDD STKc_IRAK 413 679 - -
Trre12g04532 695 MobiDBLite consensus disorder prediction 189 228 - -
Trre12g04532 695 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Trre12g04532 695 SUPERFAMILY Protein kinase-like (PK-like) 391 678 IPR011009 -
Trre12g04532 695 Pfam Protein tyrosine and serine/threonine kinase 412 676 IPR001245 GO:0004672|GO:0006468
Trre12g04532 695 MobiDBLite consensus disorder prediction 305 326 - -
Trre12g04532 695 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04532 695 Gene3D HUPs 5 155 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04532 Trre-Chr12 59531015 59534672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04532 387 680 Trihelix Transcription Factor Family AT1G70460 52.824 5.31e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre12g04532 PK_Tyr_Ser-Thr 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04532 - - gmx:100789216 1177.93