Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04531 ATGAAAACCTCTTACCACTCTGTCCATGAGCCTAGATGTATGGTCTGTAAGAAGCACTGCAAATGTTTTGAATCTTTGAGGGAGCATCTCATTGGACCTTTGGCTAAAGGAGTTTGTTCAGCTATGTTCTCTAAATGGGGTTGTCAACTTTGTCTGACACTATTTGATACTCCCGCTTCTCTCAATGACCATTGCGAAACTTGTCGCCTATCAGCCCCTGTTCCTATGGGCACAAGTGAAGTTCCCTATATAGACCCCGATATTGATTTTCTGGATTCTTCTGATGAAAATGATGCTGACTGGCGCCCTAAAGCAATTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGGTAGAGTATGCTTGGTTGATGAAGATGAGAACTTAATCTTTCACACATATGTAAAACCTCAAATCCCTGTTACTAATTATAGGTATGAAATAACTGGGTTTACAGAAGAGCGTCTTCGAGATGGTATGCCACTTAAGGAAGTTCGGGAAAAGATATCACAAATTTTATACAATGGAGAATCCATTGGAAAAGCTAGATTGGTTGGTGGCAAGGCCAGGCTTCTTGTAGGGCATGATTTGGCCCATGATTTTGATTGCTTGGGAATGGATTATCCCTATCACATGATCAGAGACACCGCAAAGTACCGTCCATTGGCGAAGACAAACTTAGCCAGCCATTCGCTTAAGTATCTTACCAAAACATATCTTGGTTATGATATCCAAACTGGGATTCACGACCCGTACGAAGATTGTGTTTCTGTGATGAGACTGTACAAGAGAATACGAGGTCAGAGTCATGAGGATGAAGGCTACGGAAAGTTGACTCCGAGTGACAACATCGTTAGCATGTGCGACAGTTGGAGATCCAAGGAGCTTGACAACCTCACACCAGATGAGCTTTATGCCATCTCAAAACCGGACTATAGGTGCTGGTGTTTGGATTTGAAGCCAAAATCGGCGGAAGCTTGA 1002 0.4311 MKTSYHSVHEPRCMVCKKHCKCFESLREHLIGPLAKGVCSAMFSKWGCQLCLTLFDTPASLNDHCETCRLSAPVPMGTSEVPYIDPDIDFLDSSDENDADWRPKAIAMDCEMVGGGSDGSLELCGRVCLVDEDENLIFHTYVKPQIPVTNYRYEITGFTEERLRDGMPLKEVREKISQILYNGESIGKARLVGGKARLLVGHDLAHDFDCLGMDYPYHMIRDTAKYRPLAKTNLASHSLKYLTKTYLGYDIQTGIHDPYEDCVSVMRLYKRIRGQSHEDEGYGKLTPSDNIVSMCDSWRSKELDNLTPDELYAISKPDYRCWCLDLKPKSAEA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04531 333 CDD REX4_like 106 270 IPR037431 GO:0006364|GO:0008408
Trre12g04531 333 SUPERFAMILY Ribonuclease H-like 105 272 IPR012337 -
Trre12g04531 333 Gene3D - 102 283 IPR036397 GO:0003676
Trre12g04531 333 SMART exoiiiendus 104 278 IPR013520 -
Trre12g04531 333 Pfam Exonuclease 106 269 IPR013520 -
Trre12g04531 333 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 277 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04531 Trre-Chr12 59522887 59524912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04531 1 325 C2H2 Transcription Factor Family AT3G27970 53.374 2.92e-122 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04531 K18327 - gmx:100805841 520.776