Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04530 ATGAAAACCTCTTACCACTCTGTCCATGAGCCTAGATGTATGGTCTGTAAGAAGCACTGCAAATGTTTTGAATCTTTGAGGGAGCATCTCATTGGACCTTTGGCTAAAGGAGTTTGTTCAGCTATGTTCTCTAAATGGGGTTGTCAACTTTGTCTGACACTATTTGATACTCCCGCTTCTCTCAATGACCATTGCGAAACTTGTCGCCTATCAGCCCCTGTTCCTATGGGCACAAGTGAAGTTCCCTATATAGACCCCGATATTGATTTTCTGGATTCTTCTGATGAAAATGATGCTGACTGGCGCCCTAAAGCAATTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGGTAGAGTATGCTTGGTTGATGAAGATGAGAACTTAATCTTTCACACATATGTAAAACCTCAAATCCCTGTTACTAATTATAGGTATGAAATAACTGGGTTTACAGAAGAGCGTCTTCGAGATGGTATGCCACTTAAGGAAGTTCGGGAAAAGATATCACAAATTTTATACAATGGAGAATCCATTGGAAAAGCTAGATTGGTTGGTGGCAAGGCCAGGCTTCTTGTAGGGCATGATTTGGCCCATGATTTTGATTGCTTGGGAATGGATTATCCCTATCACATGATCAGAGACACCGCAAAGTACCGTCCATTGGCGAAGACAAACTTAGCCAGCCATTCGCTTAATTATGATATCCAAACTGGGATTCACGACCCGTACGAAGATTGTGTTTCTGTGATGAGACTGTACAAGAGAATACGAGGTCAGAGTCATGAGGATGAAGGCTACGGAAAGTTGACTCCGAGTGACAACATCGTTAGCATGTGCGACAGTTGGAGATCCAAGGAGCTTGACAACCTCACACCAGATGAGCTTTATGCCATCTCAAAACCGGACTATAGGTGCTGGTGTTTGGATTTGAAGCCAAAATCGGCGGAAGCTTGA 978 0.4335 MKTSYHSVHEPRCMVCKKHCKCFESLREHLIGPLAKGVCSAMFSKWGCQLCLTLFDTPASLNDHCETCRLSAPVPMGTSEVPYIDPDIDFLDSSDENDADWRPKAIAMDCEMVGGGSDGSLELCGRVCLVDEDENLIFHTYVKPQIPVTNYRYEITGFTEERLRDGMPLKEVREKISQILYNGESIGKARLVGGKARLLVGHDLAHDFDCLGMDYPYHMIRDTAKYRPLAKTNLASHSLNYDIQTGIHDPYEDCVSVMRLYKRIRGQSHEDEGYGKLTPSDNIVSMCDSWRSKELDNLTPDELYAISKPDYRCWCLDLKPKSAEA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04530 325 CDD REX4_like 106 262 IPR037431 GO:0006364|GO:0008408
Trre12g04530 325 Gene3D - 102 275 IPR036397 GO:0003676
Trre12g04530 325 Pfam Exonuclease 106 259 IPR013520 -
Trre12g04530 325 SUPERFAMILY Ribonuclease H-like 105 264 IPR012337 -
Trre12g04530 325 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 269 IPR047021 GO:0004527
Trre12g04530 325 SMART exoiiiendus 104 270 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04530 Trre-Chr12 59522887 59524912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04530 1 317 C2H2 Transcription Factor Family AT3G27970 51.227 1.42e-113 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04530 K18327 - gmx:100805841 496.123