Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04529 ATGGGATCCGAAGCAGACCCTCTTGAAAACCCACCCAAAAGACAAAAATGCTCGGCATGCTATAAGCAATATAAGAAGAAAGAACATCTTATTGAGCATATGAAAACCTCTTACCACTCTGTCCATGAGCCTAGATGTATGGTCTGTAAGAAGCACTGCAAATGTTTTGAATCTTTGAGGGAGCATCTCATTGGACCTTTGGCTAAAGGAGTTTGTTCAGCTATGTTCTCTAAATGGGGTTGTCAACTTTGTCTGACACTATTTGATACTCCCGCTTCTCTCAATGACCATTGCGAAACTTGTCGCCTATCAGCCCCTGTTCCTATGGGCACAAGTGAAGTTCCCTATATAGACCCCGATATTGATTTTCTGGATTCTTCTGATGAAAATGATGCTGACTGGCGCCCTAAAGCAATTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTGGAACTTTGTGGTAGAGTATGCTTGGTTGATGAAGATGAGAACTTAATCTTTCACACATATGTAAAACCTCAAATCCCTGTTACTAATTATAGGTATGAAATAACTGGGTTTACAGAAGAGCGTCTTCGAGATGGTATGCCACTTAAGGAAGTTCGGGAAAAGATATCACAAATTTTATACAATGGAGAATCCATTGGAAAAGCTAGATTGGTTGGTGGCAAGGCCAGGCTTCTTGTAGGGCATGATTTGGCCCATGATTTTGATTGCTTGGGAATGGATTATCCCTATCACATGATCAGAGACACCGCAAAGTACCGTCCATTGGCGAAGACAAACTTAGCCAGCCATTCGCTTAAGTATCTTACCAAAACATATCTTGGTTATGATATCCAAACTGGGATTCACGACCCGTACGAAGATTGTGTTTCTGTGATGAGACTGTACAAGAGAATACGAGGTCAGAGTCATGAGGATGAAGGCTACGGAAAGTTGACTCCGAGTGACAACATCGTTAGCATGTGCGACAGTTGGAGATCCAAGGAGCTTGACAACCTCACACCAGATGAGCTTTATGCCATCTCAAAACCGGACTATAGGTGCTGGTGTTTGGATTTGAAGCCAAAATCGGCGGAAGCTTGA 1101 0.4287 MGSEADPLENPPKRQKCSACYKQYKKKEHLIEHMKTSYHSVHEPRCMVCKKHCKCFESLREHLIGPLAKGVCSAMFSKWGCQLCLTLFDTPASLNDHCETCRLSAPVPMGTSEVPYIDPDIDFLDSSDENDADWRPKAIAMDCEMVGGGSDGSLELCGRVCLVDEDENLIFHTYVKPQIPVTNYRYEITGFTEERLRDGMPLKEVREKISQILYNGESIGKARLVGGKARLLVGHDLAHDFDCLGMDYPYHMIRDTAKYRPLAKTNLASHSLKYLTKTYLGYDIQTGIHDPYEDCVSVMRLYKRIRGQSHEDEGYGKLTPSDNIVSMCDSWRSKELDNLTPDELYAISKPDYRCWCLDLKPKSAEA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04529 366 SMART exoiiiendus 137 311 IPR013520 -
Trre12g04529 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Trre12g04529 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 310 IPR047021 GO:0004527
Trre12g04529 366 SUPERFAMILY Ribonuclease H-like 138 305 IPR012337 -
Trre12g04529 366 Gene3D - 135 316 IPR036397 GO:0003676
Trre12g04529 366 Pfam Exonuclease 139 302 IPR013520 -
Trre12g04529 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Trre12g04529 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04529 Trre-Chr12 59522887 59527329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04529 14 358 C2H2 Transcription Factor Family AT3G27970 54.046 3.41e-134 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04529 K18327 - gmx:100805841 573.933