Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04527 ATGGACAAAAAGCTTGAACTCATCCATGGAACAATTGAAGCTACCATCTTTAATGCAACTCCTTACTCCCCTTCATTTCCCTTCAATTGTTTATTTATAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAACAAAAAAGTGGCAAAAACAACACAAGAAAGTGAACGTGTTTGGAACCAAACATTTAAGATTCATTGTGCTCATCTAGCTGATTCAACTATCACTATTACACTGAAAACATCATGTTCCATATTAGGAAAATTCCACATCCAAGCACAACAGTTAAAGGAAGATAGTTTGGTCAATGGATTCTTCCCTCTCCTAATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAACCTGCAAATTTGGAACCAAGTTGGACAAAGTTACTAAGTAGTGAGGAGTTTCAAGGGCTGAGGGATGCTACATTCTCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCACCATTCACCTACTTTTCAACCTCCTTTTGATAATTGTGGAGTTCCAACAAAGCTATGGGAAGATGTTTATAAAGCTATTGAAGGTGCAAAATATTTAGTATATATTGCTGGCTGGTCCTTCAATCCTAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATTCCTCATGCTAGAGAAATAAAGTTGGGTGAGTTATTGAAGAAGAAAGCAGAAGGAGTTGCTGTGAGGATTATGATTTGGGATGATGAAACATCATTGCCATTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCTTTTGCTTACTTTAAACACACGAAAGTATTATGCAGAAAGTGTCCTAGACTACATAACAAATTCCCAACAATCTTTGCTCATCATCAGAAAACCATAACTGTCGATACCAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGAGGTTTAGATTTATGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTCAAACACTTACTATGGAATCACATTACCATGATTTCTACCAGACAAACATTTCAGGAGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACCGGCGAGGCTGCTTGGGATGTATTAACCAACTTTGAACAAAGATGGACAAAACAATGTGATTCATCTCTTCTAGTCCCCGCAAACACTTTACAAAATCTCATTCCTATTTCCTCAACAAACACTTCCTTGGAAAGGAATTGGAACGTACAAGTATATCGGTCGATCGACCATTTATCGGCTAGCCAACTGTTTAGAAAACTAACAGTAGAGAGTAGCATTCATGAAGCAATATGTCGAAGCAATTAG 1383 0.376 MDKKLELIHGTIEATIFNATPYSPSFPFNCLFINGKPAYVTIKIDNKKVAKTTQESERVWNQTFKIHCAHLADSTITITLKTSCSILGKFHIQAQQLKEDSLVNGFFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFSQRSNCHVKLYHDAHHSPTFQPPFDNCGVPTKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVLCRKCPRLHNKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFQTLTMESHYHDFYQTNISGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDSSLLVPANTLQNLIPISSTNTSLERNWNVQVYRSIDHLSASQLFRKLTVESSIHEAICRSN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04527 460 Pfam C2 domain 38 109 IPR000008 -
Trre12g04527 460 Gene3D Endonuclease Chain A 175 427 - -
Trre12g04527 460 PANTHER PHOSPHOLIPASE D 5 457 IPR015679 -
Trre12g04527 460 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 124 IPR035892 -
Trre12g04527 460 SUPERFAMILY Phospholipase D/nuclease 143 406 - -
Trre12g04527 460 Pfam Phospholipase D Active site motif 295 331 IPR001736 GO:0003824
Trre12g04527 460 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 294 331 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04527 Trre-Chr12 59501850 59503865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04527 30 455 Phospholipase D Gene Family (Wang group) AT1G55180 60.185 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04527 K01115 - gmx:100807431 810.831