Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04526 ATGTGGCCAGAAGGAGTTCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGAAAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGTGAGCCAGGACATCCAAGAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAAGAGTATCTTCCTCCACATTCTCCTCATCCTGAAACTCAATATTCGAATGCACAGAAAAATAGAAGATTTATGGTTTATGTTCATTCCAAGCTCATGATAGTGGACGACCTATATATATTAATAGGATCAGCGAATGTGAACCAAAGATCGATGGACGGACAAAGGGACACGGAGATGGCGATCGGAGGCTACCAATCTCAAGATCGAGTTAATCACTGCATGAACAAAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTTGTTTTTAGAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGTTCAATAGGAGATAAAATGTGGAAAATATATAGTAATGAAGAAATTGTTGACATGGAAGGTGTGCACCTAGTAACATACCCTATGATAGTAACAAAAGATGGTTATGTTGAGGACTTGACTAATGGTGAGGATCATTTTCCTGATACAAAGGCTCTAGTGAAAGGAACAAGATCAAAATTATTACCACCTGTCATGACTACATAG 720 0.3778 MWPEGVPESEPVQDILHWTRETMKMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKENEEYLPPHSPHPETQYSNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEMAIGGYQSQDRVNHCMNKGDIHAYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSNEEIVDMEGVHLVTYPMIVTKDGYVEDLTNGEDHFPDTKALVKGTRSKLLPPVMTT 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04526 239 PANTHER PHOSPHOLIPASE D 1 223 IPR015679 -
Trre12g04526 239 Pfam Phospholipase D C terminal 156 228 IPR024632 -
Trre12g04526 239 SMART pld_4 84 111 IPR001736 GO:0003824
Trre12g04526 239 Gene3D Endonuclease Chain A 17 146 - -
Trre12g04526 239 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 84 111 IPR001736 GO:0003824
Trre12g04526 239 SUPERFAMILY Phospholipase D/nuclease 62 168 - -
Trre12g04526 239 Pfam PLD-like domain 86 126 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04526 Trre-Chr12 59500524 59501677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04526 1 239 Phospholipase D Gene Family (Wang group) AT1G55180 64.609 4.02e-106 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04526 K01115 - gmx:100807431 404.06