Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04512 ATGGCAACCAACTTAGCAGAAAGGGTGCAATACCCCTTAGAGTCATCCTTCTACAAGATCCTCGACGAGATTGGTGCCGGTAACAGCGCTGTCGTCTACAAAGCAATCTGCATCCCCATAAACTCTACACCAGTGGCTATAAAATCGATAGACTTAGACCGTTCGCGCCCCGATCTTGACGATGTTCGACGTGAAGCAAAAACATTATCACTTCTTTCTCACCCCAACATCCTCAAAGCTCACTGTTCCTTCACTGTCGACCGCCGTCTTTGGGTGGTTATGCCATTCATGGCAGGAGGTTCATTACAATCCATAATCTCTCACTCATTTCAAAACGGCTTAACAGAACAATCCATAGCTGTTATTCTGAAAGACACTCTCAATGCTCTTTCTTACCTTCATGGACAAGGTCATCTTCATAGAGATATAAAATCTGGTAACATTCTTGTTGATTCAAATGGATTAGTGAAACTTGCTGATTTTGGTGTATCTGCTTCCATTTATGAATCAAACAACTCTGTAGGAGCATGTTCTTCTTATTCATCTTCATCTTCTAATTCTTCTTCTTCTCATGTATTTACTGATTTTGCTGGAACACCTTATTGGATGGCTCCTGAAGTTATTCATTCTCATAATGGTTACAGTTTCAAAGCTGATATTTGGTCTTTTGGGATAACTGCTTTGGAATTAGCACATGGAAGACCACCACTTTCTCATCTTCCTCCTTCAAAATCAATGATGCTTAACATTACCAAGAGGTTTAGGTTTTCTGATTTTGATAAATATAGTCATAAGGGTCATGGTGGTGGTGGTAGTAATAAATTTTCTAAGGCTTTTAAGGATATGGTTGCTTCTTGTTTGAATCAAGATCCTACAAAAAGACCTTCTGCTGAGAAGTTGCTTAAGCATCCTTTCTTTAAGAACTGTAAAGGGTCAGAGTTTTTGGTGAAGAATGTGTTGAATGGATTGCCTAGTGTTGAGAAAAGGTATAAAGAGATCAAAGTTATGGATCCAGATTCAAAGGGTAATGATGATGGTGATGAAGATGAGGAATCTATGGTGAAACAAAGAAGAATTAGTGGTTGGAATTTCAATGAAGATGGATTGAAACTTGAGCCAGTATTCCCAAAGGATCTAAGTAGAGATGATGAAGTTGTGAAACAAGTTCGGTTTGAAGAAGAAAAGGTGATCAAAGAGGATGATGTTGTTGCATCATCAGGAACTGTGATGGAGGAAACAAACCCCAATGCTTCTGATGTGGTTGATCATGAAAATGTTGGTGGTATATTGAAGAACCGCGAAGCTACGTTGGGAACTCTGAATGTGTTGAAAGAAAGCTTGGAACAAGAGCTGGGACAAGTGAAGTTTCTGATGAATTTAATTGGTGGAAATGGAGAGGAGATTCATGTGGATGACAGTGAGGAGAAAATGGCGCAGGAGATCTCTAAGTTAAGGATAGAAGTAGAAAATGAGAGGAAGAAGAATTTGCAGTTGGAGTTGCAGCTGGAGAATGTCAAGCTTCACCTAATTTCCTCTGCTGTTAGTAGTCCTACAAGTTAA 1560 0.3949 MATNLAERVQYPLESSFYKILDEIGAGNSAVVYKAICIPINSTPVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAGGSLQSIISHSFQNGLTEQSIAVILKDTLNALSYLHGQGHLHRDIKSGNILVDSNGLVKLADFGVSASIYESNNSVGACSSYSSSSSNSSSSHVFTDFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLNITKRFRFSDFDKYSHKGHGGGGSNKFSKAFKDMVASCLNQDPTKRPSAEKLLKHPFFKNCKGSEFLVKNVLNGLPSVEKRYKEIKVMDPDSKGNDDGDEDEESMVKQRRISGWNFNEDGLKLEPVFPKDLSRDDEVVKQVRFEEEKVIKEDDVVASSGTVMEETNPNASDVVDHENVGGILKNREATLGTLNVLKESLEQELGQVKFLMNLIGGNGEEIHVDDSEEKMAQEISKLRIEVENERKKNLQLELQLENVKLHLISSAVSSPTS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04512 519 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Trre12g04512 519 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Trre12g04512 519 Pfam Protein kinase domain 18 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04512 519 SUPERFAMILY Protein kinase-like (PK-like) 17 310 IPR011009 -
Trre12g04512 519 Gene3D Transferase(Phosphotransferase) domain 1 100 356 - -
Trre12g04512 519 FunFam Serine/threonine-protein kinase BLUS1 7 96 - -
Trre12g04512 519 SMART serkin_6 18 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04512 519 Coils Coil 474 508 - -
Trre12g04512 519 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 10 446 IPR047173 GO:0043539
Trre12g04512 519 FunFam Serine/threonine-protein kinase BLUS1 100 351 - -
Trre12g04512 519 ProSiteProfiles Protein kinase domain profile. 18 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04512 Trre-Chr12 59352340 59353899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04512 1 497 MAP Kinase Kinase Kinase Kinase AT4G14480 55.159 3.39e-178 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre12g04512 Pkinase 5.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04512 K08835 - gmx:100820227 652.899