Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04511 ATGAACAACAACAACAACATCGTCTCGAGAAACGGCAACGGAACAACACAAGCTTGTGCTGCTTGTAAATACCAACGTAGGAAGTGTGGTCCAACCTGCATTCTTGCACCATATTTTCCTCATGATCGTCAAAAACAATTCATAAATGCTCATAAATTATTTGGTGTTGGTAAAATCACAAACATGATTAAGAATGTTCCGCCTCAACTTCGAGATGTAACTATGGCAACAATCATGTATCAATCTGATGTGCGAGCCGCTGATCCTGTTGGTGGTTGTTATAGATATCTTCAACACCTTCAATCTCAATATGAATTTCTTGAAGCTGAGCTTGATTTAACTCGTCAACATATCGCTATTTGTCGTGCATCATCGCAATCACAACAACTTGCTGCTAGTGCTAATCATCATCATCATCATCATTATAATGATATGATCATGAATAATAATAGTAATGATGCTGCTGCTGCTTTGAATATTCTAAATCAGTTTAATCAGCAACATTTTGTTGAAGAACAAATGAATATTAATATGCTGCCTCAACCGCAATATGTTGATGATGTCGATCTTAACCCTAATTATGTTCCTTTACAACAAGAGGATCTTAATAATTGGGTGAACTCTATACCGTTGTCGCCGTTAACGTTGCAGGACAACAAAAAGGAGGTGGAAGAGGAGGAAGGAGAAAATGAAGAGCTTGTTGGTGATGATCAAGAAAGTGATCAGAAACCGGTTTTTGACCTAATCAATGAAATGAATTCTTTGGATACCACCGGAAGTAATAATATCGATCGCGGGCACCAGTGA 807 0.3792 MNNNNNIVSRNGNGTTQACAACKYQRRKCGPTCILAPYFPHDRQKQFINAHKLFGVGKITNMIKNVPPQLRDVTMATIMYQSDVRAADPVGGCYRYLQHLQSQYEFLEAELDLTRQHIAICRASSQSQQLAASANHHHHHHYNDMIMNNNSNDAAAALNILNQFNQQHFVEEQMNINMLPQPQYVDDVDLNPNYVPLQQEDLNNWVNSIPLSPLTLQDNKKEVEEEEGENEELVGDDQESDQKPVFDLINEMNSLDTTGSNNIDRGHQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04511 268 Coils Coil 97 117 - -
Trre12g04511 268 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 151 - -
Trre12g04511 268 MobiDBLite consensus disorder prediction 220 268 - -
Trre12g04511 268 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Trre12g04511 268 MobiDBLite consensus disorder prediction 251 268 - -
Trre12g04511 268 Coils Coil 216 236 - -
Trre12g04511 268 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04511 Trre-Chr12 59350292 59351738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04511 17 179 AS2 family AT3G13850 44.693 3.49e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre12g04511 LOB 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04511 - - mtr:11423276 342.428