Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04509 ATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACCAATAATTATCATCAACAATACTTAGCTCCATCACAATCTACTCAAATTCATGATGAAGCTCCTCCACCTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTACAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTAAAGCAAAGAGCAAGCAATGAAATAATAAGAAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCATTAGGGGACTTAACTGGTATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATCACTCCTTCTCCAATTCCTCAACCAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAACATCAAAATTTTAGCTTTTTAAGACAAGAACAAGAAATTCAAATACCCTCTTGGCTTTGTCAATCTAGCATAGCTTCAAACTATTCAAGATTGGATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTGCATCTTACCAACCATCTGAAATTTCACCTCACATGTCAGCAACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATAAACAATTTTTCTTCTCCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATCATGATCATAATAATATTAATCATGATGGTAATGATGGCCGTCGTGTCGGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTTAGACCACTTTCTGATAGTGATATTCTCAACATTGCTGGTATGGGAAACTGCATGAATTCAAACCAAACCCAAAAACCATGGCAAGGTAATTAA 1335 0.3775 MSNLTSASGEASANSSGNRNEIGTNNYHQQYLAPSQSTQIHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIITPSPIPQPNSHNMINLQTQDFSLKKEHQNFSFLRQEQEIQIPSWLCQSSIASNYSRLDQNQIQSLDENPNPRNGPTFASYQPSEISPHMSATALLQKAAQMGSTSSSQQQSMIMISGTHKHCHVSVDDNNLSSCEDQMINNFSSPGFDGTSFENTYAKNILNSNHHHDHNNINHDGNDGRRVGGVGAGGNDGFTRDFLGLRPLSDSDILNIAGMGNCMNSNQTQKPWQGN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04509 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Trre12g04509 444 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
Trre12g04509 444 MobiDBLite consensus disorder prediction 1 42 - -
Trre12g04509 444 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Trre12g04509 444 Gene3D Classic Zinc Finger 56 123 - -
Trre12g04509 444 Gene3D Classic Zinc Finger 132 212 - -
Trre12g04509 444 MobiDBLite consensus disorder prediction 278 297 - -
Trre12g04509 444 Pfam Zinc-finger double-stranded RNA-binding 77 99 IPR022755 -
Trre12g04509 444 SMART c2h2final6 154 174 IPR013087 -
Trre12g04509 444 SMART c2h2final6 77 99 IPR013087 -
Trre12g04509 444 SMART c2h2final6 119 149 IPR013087 -
Trre12g04509 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 434 IPR031140 -
Trre12g04509 444 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Trre12g04509 444 MobiDBLite consensus disorder prediction 1 60 - -
Trre12g04509 444 FunFam protein indeterminate-domain 12-like 56 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04509 Trre-Chr12 59328075 59330646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04509 1 438 IDZ Gene Family AT1G55110 51.836 3.75e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04509 zf-C2H2_jaz 4.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04509 K25870 - lja:Lj3g3v0323160.3 494.582