Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04508 ATGATCAAAGGTTTTATAGAGGAAGAAAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACCAATAATTATCATCAACAATACTTAGCTCCATCACAATCTACTCAAATTCATGATGAAGCTCCTCCACCTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTACAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTAAAGCAAAGAGCAAGCAATGAAATAATAAGAAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTGCACCATGACCCATCAAGAGCATTAGGGGACTTAACTGGTATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATCACTCCTTCTCCAATTCCTCAACCAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAACATCAAAATTTTAGCTTTTTAAGACAAGAACAAGAAATTCAAATACCCTCTTGGCTTTGTCAATCTAGCATAGCTTCAAACTATTCAAGATTGGATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTGCATCTTACCAACCATCTGAAATTTCACCTCACATGTCAGCAACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATAAACAATTTTTCTTCTCCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATCATGATCATAATAATATTAATCATGATGGTAATGATGGCCGTCGTGTCGGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTTAGACCACTTTCTGATAGTGATATTCTCAACATTGCTGGTATGGGAAACTGCATGAATTCAAACCAAACCCAAAAACCATGGCAAGGTAATTAA 1365 0.3758 MIKGFIEEENMSNLTSASGEASANSSGNRNEIGTNNYHQQYLAPSQSTQIHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIITPSPIPQPNSHNMINLQTQDFSLKKEHQNFSFLRQEQEIQIPSWLCQSSIASNYSRLDQNQIQSLDENPNPRNGPTFASYQPSEISPHMSATALLQKAAQMGSTSSSQQQSMIMISGTHKHCHVSVDDNNLSSCEDQMINNFSSPGFDGTSFENTYAKNILNSNHHHDHNNINHDGNDGRRVGGVGAGGNDGFTRDFLGLRPLSDSDILNIAGMGNCMNSNQTQKPWQGN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04508 454 SMART c2h2final6 87 109 IPR013087 -
Trre12g04508 454 SMART c2h2final6 164 184 IPR013087 -
Trre12g04508 454 SMART c2h2final6 129 159 IPR013087 -
Trre12g04508 454 MobiDBLite consensus disorder prediction 9 52 - -
Trre12g04508 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Trre12g04508 454 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Trre12g04508 454 Gene3D Classic Zinc Finger 66 133 - -
Trre12g04508 454 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Trre12g04508 454 Gene3D Classic Zinc Finger 142 222 - -
Trre12g04508 454 MobiDBLite consensus disorder prediction 1 70 - -
Trre12g04508 454 MobiDBLite consensus disorder prediction 288 307 - -
Trre12g04508 454 FunFam protein indeterminate-domain 12-like 66 135 - -
Trre12g04508 454 Pfam Zinc-finger double-stranded RNA-binding 87 109 IPR022755 -
Trre12g04508 454 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Trre12g04508 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 444 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04508 Trre-Chr12 59328045 59330646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04508 8 448 IDZ Gene Family AT1G55110 52.146 2.74e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g04508 zf-C2H2_jaz 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04508 K25870 - gmx:100819692 494.967