Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04493 ATGGGTGCTTCTGGAAAATGGTTTAAATCACTTCTTTCTCATAAAAAAACATCATCAACTACTGATCAAGAGAAGAAGTTTAATGGTGATAACAAGATTAGTACTAAGAAAAAATGGAAGCTATGGAAGACATCTTCAGAAGGGTCTTCTTCAACTTCATGTATGAACAAGAGTGGTGCTGCTGTGTACGATTCTTCAGTGACTGCTACTGCTGCTGCTGTGGCTGTTGTTGTTCGAGCTCCACCTAAAGATTTCATCTTCATCAGGAAGGAATGGGCTGCTATTCGGATTCAAGCCGTTTTTCGAGCTTTCCTGGCAAGAAGAGCTTTGAGGGCATTGAGAGCAGTGGTGAGGCTGCAAGCTATATTTCGAGGTAGGCAAGTGAGGAAACAAGCAGCTGTTACTCTAAAATGCATGCAAGCTCTTGTTAGAGTTCAAGCACGCGTAAGGGCTAGGAATGTCAGGAATTCTCCAGAAGGGAAAGCAGTGCAGCAGCTAATCGACGACCATCGCAACCAAGCTGATTCTGTCAAACTTGTAGAGCAAGGATGGTGTGAAATTCCTGGCACTGCAGATGAAGTTAAAACCAAGCTAAGGATGAGGCAAGAAGGAGCTATCAAGAGAGATAGAGCAATGGCATACTCTCTATCCACACAGCAGTCAAGAATCAGTGCTAGTCCAAACTCAAAAGCCACAACAAAATCTATCACTCTTCTCAAGCATCATCAAAATCTTGACAACAATAAGAGCTTAGGAAATAGTTTGTTAGAACGCTGGATGTCGACCAAACCATGTCCATGGGAGAGTCCAATCTCAAGTAGGAAAAGTGAAGAACTTGTTCCTAATTTTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCAGCTCTTAAAATTTGTCAGCAAACTCCATCATCTTCGACAATAAGCTCCGAATACATGAATGATGATAGCCTTATATCAACTTCATGTACATCTGAATCTCCATCTATGCCATTCCCTAACACTGTTATGGTTGAAACAAGTGAGGAAAAAGATGTTCATCTACCTAGCTACATGAATGTAACAGAATCAACTAAGGCTAAACTCAAAGGTTATAGGTCTACTTCGCAGAATTCAAAGAGACTCGCAATGGACGATTGTATGTCTCATAACACAAGTTCAACCTTTCTGAATGGATATAATAGTATAAGCAGTTCCGGTTCTGACCCTTCGGTTAATCCATGGAAGGATCGTTGCACAACGCCACTAAGGGCAAGCTATTATCAAAAACGATATGCCAGAAGATAG 1290 0.4124 MGASGKWFKSLLSHKKTSSTTDQEKKFNGDNKISTKKKWKLWKTSSEGSSSTSCMNKSGAAVYDSSVTATAAAVAVVVRAPPKDFIFIRKEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLKCMQALVRVQARVRARNVRNSPEGKAVQQLIDDHRNQADSVKLVEQGWCEIPGTADEVKTKLRMRQEGAIKRDRAMAYSLSTQQSRISASPNSKATTKSITLLKHHQNLDNNKSLGNSLLERWMSTKPCPWESPISSRKSEELVPNFQSRRNGVTTRISALKICQQTPSSSTISSEYMNDDSLISTSCTSESPSMPFPNTVMVETSEEKDVHLPSYMNVTESTKAKLKGYRSTSQNSKRLAMDDCMSHNTSSTFLNGYNSISSSGSDPSVNPWKDRCTTPLRASYYQKRYARR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04493 429 PANTHER IQ-DOMAIN 5-RELATED 1 404 - -
Trre12g04493 429 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Trre12g04493 429 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Trre12g04493 429 Gene3D - 91 132 - -
Trre12g04493 429 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Trre12g04493 429 SMART iq_5 89 111 IPR000048 GO:0005515
Trre12g04493 429 SMART iq_5 112 133 IPR000048 GO:0005515
Trre12g04493 429 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04493 Trre-Chr12 59258577 59260850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04493 1 411 IQD Protein Family AT1G72670 42.989 5.14e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04493 - - tpra:123894121 689.108