Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04492 ATGGGTGCTTCTGGAAAATGGTTTAAATCACTTCTTTCTCATAAAAAAACATCATCAACTACTGATCAAGAGAAGAAGTTTAATGGTGATAACAAGATTAGTACTAAGAAAAAATGGAAGCTATGGAAGACATCTTCAGAAGGGTCTTCTTCAACTTCATGTATGAACAAGAGTGGTGCTGCTGTGTACGATTCTTCAGTGACTGCTACTGCTGCTGCTGTGGCTGTTGTTGTTCGAGCTCCACCTAAAGATTTCATCTTCATCAGGAAGGAATGGGCTGCTATTCGGATTCAAGCCGTTTTTCGAGCTTTCCTGGCAAGAAGAGCTTTGAGGGCATTGAGAGCAGTGGTGAGGCTGCAAGCTATATTTCGAGGTAGGCAAGTGAGGAAACAAGCAGCTGTTACTCTAAAATGCATGCAAGCTCTTGTTAGAGTTCAAGCACGCGTAAGGGCTAGGAATGTCAGGAATTCTCCAGAAGGGAAAGCAGTGCAGCAGCTAATCGACGACCATCGCAACCAAGCTGATTCTGTCAAACTTGTAGAGCAAGGATGGTGTGAAATTCCTGGCACTGCAGATGAAGTTAAAACCAAGCTAAGGATGAGGCAAGAAGGAGCTATCAAGAGAGATAGAGCAATGGCATACTCTCTATCCACACAGTCAAGAATCAGTGCTAGTCCAAACTCAAAAGCCACAACAAAATCTATCACTCTTCTCAAGCATCATCAAAATCTTGACAACAATAAGAGCTTAGGAAATAGTTTGTTAGAACGCTGGATGTCGACCAAACCATGTCCATGGGAGAGTCCAATCTCAAGTAGGAAAAGTGAAGAACTTGTTCCTAATTTTCAATCAAGAAGGAATGGTGTGACAACTAGGATTTCAGCTCTTAAAATTTGTCAGCAAACTCCATCATCTTCGACAATAAGCTCCGAATACATGAATGATGATAGCCTTATATCAACTTCATGTACATCTGAATCTCCATCTATGCCATTCCCTAACACTGTTATGGTTGAAACAAGTGAGGAAAAAGATGTTCATCTACCTAGCTACATGAATGTAACAGAATCAACTAAGGCTAAACTCAAAGGTTATAGGTCTACTTCGCAGAATTCAAAGAGACTCGCAATGGACGATTGTATGTCTCATAACACAAGTTCAACCTTTCTGAATGGATATAATAGTATAAGCAGTTCCGGTTCTGACCCTTCGGTTAATCCATGGAAGGATCGTTGCACAACGCCACTAAGGGCAAGCTATTATCAAAAACGATATGCCAGAAGATAG 1287 0.4118 MGASGKWFKSLLSHKKTSSTTDQEKKFNGDNKISTKKKWKLWKTSSEGSSSTSCMNKSGAAVYDSSVTATAAAVAVVVRAPPKDFIFIRKEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLKCMQALVRVQARVRARNVRNSPEGKAVQQLIDDHRNQADSVKLVEQGWCEIPGTADEVKTKLRMRQEGAIKRDRAMAYSLSTQSRISASPNSKATTKSITLLKHHQNLDNNKSLGNSLLERWMSTKPCPWESPISSRKSEELVPNFQSRRNGVTTRISALKICQQTPSSSTISSEYMNDDSLISTSCTSESPSMPFPNTVMVETSEEKDVHLPSYMNVTESTKAKLKGYRSTSQNSKRLAMDDCMSHNTSSTFLNGYNSISSSGSDPSVNPWKDRCTTPLRASYYQKRYARR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04492 428 Gene3D - 91 132 - -
Trre12g04492 428 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Trre12g04492 428 PANTHER IQ-DOMAIN 5-RELATED 1 403 - -
Trre12g04492 428 SMART iq_5 89 111 IPR000048 GO:0005515
Trre12g04492 428 SMART iq_5 112 133 IPR000048 GO:0005515
Trre12g04492 428 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Trre12g04492 428 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Trre12g04492 428 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04492 Trre-Chr12 59258577 59260850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04492 1 410 IQD Protein Family AT1G72670 42.857 7.02e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04492 - - tpra:123894121 682.559