Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04488 ATGTCACCATGTTTGATGAATAAAAGGCACCAGCCTTCTCCACTGGTTCTGCAATTATTGAGGGATGTGGTGTTTGGCATGACATATTTGCACGAGGAGGGTTATCTGCACCGGAACCTGAACCCGAGCAGTATTTTAATAACCACGGGGAAGCGGTTACGTGCAAAAATTTCTGATTTCAGTGTCAGCCGAAAGCTTGATGGAAATATGATTTTATACGATAATGTTACCAGCAATCTTGGGTGGCAAGCACCGGAGGTTCTACGTCATCAACGGCAAACACGTGCCAGTGATATTTTTAGCAGGGGCTGTGTGTTTTCGTTTTGTCTAAGGGATGGCCAACACCCATTTGGCGATGGGGATGATTCAGAACGTGCTGACAACATATTGAAAAACAAGAAATGTATCACTTCAGCCCCTGAAGTTGAGGATATAATTTCTAAATTACTACACCCTATTCCTGAGCAAAGGCCATATGTAGAAGATATCCTATTACATCCTATGTTTTGGAGCCAGGAGAAAAGACTTCAATTGTTCTGTGATTCCGGCGATGAACTTAAGTTTTGTAGAGATGCTAATATTTTGTTTGAAGTTCAAAGAATTAACATAGACCTTCCATGGGATATTAAGCTGTCTAGAAAATTAGCTACTTCACTCCAGCAAGATAACATATATAATAATTTTGGGCTTGTTAAAGACCTACTAAGAGCAATCAGAAATAAGACTGCTCATCATGGAGATCGACAAACCTCAAGGTTTTTTCTTTGA 768 0.4023 MSPCLMNKRHQPSPLVLQLLRDVVFGMTYLHEEGYLHRNLNPSSILITTGKRLRAKISDFSVSRKLDGNMILYDNVTSNLGWQAPEVLRHQRQTRASDIFSRGCVFSFCLRDGQHPFGDGDDSERADNILKNKKCITSAPEVEDIISKLLHPIPEQRPYVEDILLHPMFWSQEKRLQLFCDSGDELKFCRDANILFEVQRINIDLPWDIKLSRKLATSLQQDNIYNNFGLVKDLLRAIRNKTAHHGDRQTSRFFL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04488 255 SUPERFAMILY Protein kinase-like (PK-like) 7 174 IPR011009 -
Trre12g04488 255 Pfam Protein kinase domain 18 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04488 255 Gene3D KEN domain 176 252 IPR038357 -
Trre12g04488 255 PANTHER IRE1-RELATED 8 248 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre12g04488 255 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04488 255 Pfam Ribonuclease 2-5A 175 248 IPR010513 GO:0004540|GO:0006397
Trre12g04488 255 ProSiteProfiles Protein kinase domain profile. 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04488 255 Gene3D Transferase(Phosphotransferase) domain 1 4 175 - -
Trre12g04488 255 ProSiteProfiles KEN domain profile. 172 255 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04488 Trre-Chr12 59239307 59240581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04488 12 224 MAP Kinase Kinase Kinase AT3G13530 26.852 2.46e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre12g04488 Pkinase 7.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04488 K08852 - ming:122083784 191.815