Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04486 ATGCAGCCCTTTGGATTACTCCCCGTTATTGAAGATGGTGATTATACTCTCTATGAATCTAGGGCAATCCTAAGGTACTATGCTGAAAAGTACAAAAACCAAGGAACTGAATTACTTGGAAAGACAATTGAAGAAAGGGGTCTTGTGGAGCAATGGCTAGAAGTTGAAGCTCATAACTTCAACCCACCAGTCTTCAACCTAGTCATGAATATCTTGGTTTACCCATTAGTGGGCCTTCCATCTGACCCAAAAGTGATTGAAGAGAGTAAAGAAAAGCTTGGAAAAGTTTTGGACATTTATGAGGAGAGGCTATCAAAGACTAATAAGTACTTGGCTGGTGATTTCTTTAGCCTTGCTGACCTTAGTCATCTCCCATTTGGACATTATTTATTGAATTCAATAGAATTAGAGAATATGGTAAAGGAAAGGAAGCATGTGAGTGCTTGGTGGGATGATATTAGCAATAGGCCATCTTGGAAGAAGGTTCTTGAACTTTATAAGTTCCCTATGTGA 513 0.3899 MQPFGLLPVIEDGDYTLYESRAILRYYAEKYKNQGTELLGKTIEERGLVEQWLEVEAHNFNPPVFNLVMNILVYPLVGLPSDPKVIEESKEKLGKVLDIYEERLSKTNKYLAGDFFSLADLSHLPFGHYLLNSIELENMVKERKHVSAWWDDISNRPSWKKVLELYKFPM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04486 170 CDD GST_C_Phi 44 163 IPR034347 -
Trre12g04486 170 Gene3D - 40 163 - -
Trre12g04486 170 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 164 - -
Trre12g04486 170 SFLD Main (cytGST) 2 156 - -
Trre12g04486 170 SUPERFAMILY GST C-terminal domain-like 32 163 IPR036282 -
Trre12g04486 170 Gene3D Glutaredoxin 1 39 - -
Trre12g04486 170 SUPERFAMILY Thioredoxin-like 2 32 IPR036249 -
Trre12g04486 170 Pfam Glutathione S-transferase, C-terminal domain 67 157 IPR004046 -
Trre12g04486 170 SFLD Glutathione Transferase (cytosolic) 2 156 IPR040079 -
Trre12g04486 170 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 35 IPR004045 -
Trre12g04486 170 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 42 170 IPR010987 -
Trre12g04486 170 FunFam Glutathione S-transferase F2 40 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04486 Trre-Chr12 59226477 59227276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04486 1 170 Glutathione S-transferase Gene Family AT2G30870 61.176 6.12e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04486 K00799 - gmx:100809406 292.352