Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04484 ATGGGGCATCACTCTTGCTGCAACAAACAAAAGGTGAAAAGAGGACTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCACAAGAAGCTGCTCTCATTATTGAACTTCATACTATTCTAGGAAACAGGTGGGCTCAGATAGCGAAGCATTTACCGGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAAAAGAAACTACTTTCACATGATCTTGTTCCTTCTTTAACCACATTTTCTGATCATATTCACTGTCCTACAAATGTTTCTATGGAAACTTTCTTCCCTTTATTTAATGACAATCCTACCCTTAACAACTTAGATCATCATCATCTATACCTTCCTATCAATATCCCATCTCCAATCCTACAAGATCAAAATGATATCAAGAATATTATTGATATTAACAATTTCAATGCAAATTTCTTACATGTTCATCAAAATAATCCAATCTTGCCAGAAATTACAATACCATTATCCAATAATAATAATAATAATAATAATAATATTATTATTCCACCTTCTTATGATCAATTAGATACATGGTCATTATTTCATCATCTCAATCCAAATATTCAAGAAAATCATCACCAAATTATTACCACAAAAAGTGAAGCTTCAACCCAAAATTTTAATATTGTTGACAATTTTATCAATCCAATTCCAAATACTTGGAATCATTTGGTGGAACTTGAGCCTATTGTGCCAAAAGTGTGTGAAACTATAAAAGATGATTATGTTTGTAGCATTCCATTTTCTTTTACTGCTTCTTCACAAGAACATGTTGTTGTTCATCATCAAGTTGTAAACCAAATTGATGAGTGTTATAAAGATCAACAAAAGAGTATAATTTGTCCACAAGATCATCATCATCATAATCAAATTGTGGCTGCATCAAATAATGATCAAGTGGAGTATATTGATTCTCTCATCATGTCATCATTGCCATCTTCAACAACAACATCTTCATCATCACCATTATCATTCTATCAACCACAAGACAAAATTCTCACAAAATCAATCCATCCTTCATGTAATTGA 1188 0.3258 MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDLVPSLTTFSDHIHCPTNVSMETFFPLFNDNPTLNNLDHHHLYLPINIPSPILQDQNDIKNIIDINNFNANFLHVHQNNPILPEITIPLSNNNNNNNNNIIIPPSYDQLDTWSLFHHLNPNIQENHHQIITTKSEASTQNFNIVDNFINPIPNTWNHLVELEPIVPKVCETIKDDYVCSIPFSFTASSQEHVVVHHQVVNQIDECYKDQQKSIICPQDHHHHNQIVAASNNDQVEYIDSLIMSSLPSSTTTSSSSPLSFYQPQDKILTKSIHPSCN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04484 395 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre12g04484 395 FunFam Myb transcription factor 69 116 - -
Trre12g04484 395 FunFam MYB transcription factor 6 66 - -
Trre12g04484 395 CDD SANT 17 61 IPR001005 -
Trre12g04484 395 SMART sant 13 63 IPR001005 -
Trre12g04484 395 SMART sant 66 114 IPR001005 -
Trre12g04484 395 Gene3D - 11 67 - -
Trre12g04484 395 Gene3D - 69 116 - -
Trre12g04484 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre12g04484 395 PANTHER MYB DOMAIN PROTEIN 55 1 260 - -
Trre12g04484 395 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre12g04484 395 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre12g04484 395 CDD SANT 69 109 IPR001005 -
Trre12g04484 395 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre12g04484 395 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Trre12g04484 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04484 Trre-Chr12 59201182 59202651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04484 1 118 MYB Transcription Factor Family AT3G13890 95.763 1.72e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre12g04484 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04484 K09422 - gmx:102662609 411.379