Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04482 ATGGCACGGGGGAGGAGGATTAGGGCAAGGTTGCGGAGGAGTAATCTCTATACATTTGGTTGTCTTCGGCCGAATATTTCTGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGTTACTCAAGAACCGTGTATTGCAACCAGCCTCAAGTCCATGAAAAGAGATCTCTATTTTATTGCAAGAATAATATATCAACGACTAAATATAATGCTATCATGTTTTTTCCTAAGGCACTGTTTGAACAGTTTCGAAGGGTTGCCAACATATATTTCCTTTTGGCTGCTTGCCTCTCGGCATCTCCAATTTCACCTTTCAGCGCGTTGAGCATGATTGCTCCTTTGGTTTTTGTTGTGGGGCTTAGTATGGCAAAAGAAGCATTGGAGGATTCGCGTAGGTTTCTCCAGGATGTTAAGGTTAATCGCAGGAAAGCTAGTCTACATAGAGGCAATGGTATTTTTGGTCTAAGGTCATGGCAGAAAATTATGGTTGGGGATATAGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGTCTTCAAGTTATGAGGATGGGATATGCTATGTGGAGACCATGAATTTAGATGGAGAGACAAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCCTGACCCTTGATAATGATGGAGCTTTTAAGGATTTCTCCGGAACAATACGTTGTGAAGACCCAAATCCAAATCTTTACACTTTTGTTGGGAACTTTGAGTATGATCGTCAGGTTTATCCTCTTGACCCTGGACATATTCTCCTCCGAGATTCAAAGCTTAGGAACACAGAGTATGTCTATGGGGTGGTCATTTTCACCGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATCATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGTTAAGACTAAGTACCAGGCCACAGAGTGGTGGTATTTACGCCCCGACGATATTGAATATCAGTATGATCCCGCAAAAATTGGATTGGCTGGGATGAGCCATCTGATCACTGCCCTTATTCTTTATGGATATTTGATACCTATCTCTCTTTATGTTTCAATTGAGATTGTTAAGGTATTACAGGCCACCTTCATTAACCAAGACCTTCAAATGTATGATGAAGAAACTGGGACTCCTGCTGAAGCACGAACGTCAAATCTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCCTATGGCGTACGCTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGATGAGGAAGATTCAGATCTCTCTAATTTCCCCATGCAAAAGAAGGGTAACGCGCCGTGGGAAAATGTTAGAAGAGATGAAGAAATTGAACTTGAGACAGTTGTTAATTCTAAGGGTGGTGAGGATCAAAGGCCTTCCATAAAGGGATTTGGTTTTGTTGACAGCCGCCTCATGAATGGCAATTGGTCGAAAGATCCCAATGCTGATGTCATTCTGTTGTTTTTCCGGATACTAGCAGTCTGTCACACTGCCATTCCCGAGCTTAATGAGGAGAATGACAGTTGTACTTATGAAGCTGAATCACCTGATGAAGGGGCTTTTCTTGTAGCTGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACCCAATCAACTGTTGTTGTACGCGAAAGAATTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATATTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGTATGTCGGTGATTGTGCGTGATGAGGAGGGAAACATTATTCTTTTATGCAAAGGAGCTGACAGTATCATATTTGATCGATTATCTAAGAATGGAAAGAAGTATTTGGATGCCACTTCTAGGCATTTGAATGAATATGGGGAAGTGGGTTTGAGAACACTAGCCCTGGCTTACAGAAATCTTGATGAACAAGAGTACTCTGATTGGAACGACGAGTTTCAGAAAGCCAAGACAACTGTTGGGCCTGACAGAGACGCAATGCTTGAGAAGGTATCAGATAGTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCATGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCTCTACTGCAAATTCAGATTCAGTAATCAATGATGGGATAGAGGTAATCAAAGGCGACATCTTGACTCAAATCACTAATGCCTCACAATTGATGAAGCTGGAGAAGGACCCACATGCTGCATTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTCTAGAAGATGATGTCAAACACCAATTTTTGGCATTAGCTGTTGAGTGTGCATCTGTCATCTGCTGCCGTGTGTCTCCCAAGCAAAAGGCTTTGGTAACAAGATTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAGGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCCATTGCTCAATTTCGATTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGATTGGTACATGATATTGTTTAATGTCGTTCTTACATCGTTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTGCCATCTGAAGTTTGCTTACAGTTTCCTGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTGTACTCTTCCCTTGTCATCTTCTTCCTTGTCATCATCATTTTCTATGACCAAGCATTCCGTCTGAATGGCCAGACTGCAGACATGGCTGCTGTTGGTACCACAATGTTCACCTCCATCATCTGGGCTGTCAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTCTGGGGCAGCATTGCCAGTTGGTACCTCTTTCTCTTATTATATGGCATGCTTTCTCCACAATATTCCAAGACTGCGTACCAAATATTGGTTGAAGTGCTTGCTCCTGCTCCTATTTATTGGGCAGCAACCATTCTAGTAACTGTTACATGCAATCTTCCTTATCTTGCCCACATATCGTTCCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGTTCTAAAGCAAGACAAGAAACAAAGATTGGTTTCACAGCAAGAGTGGAAGCAAAGATCAGGCAGCTGAAAGGGAGGCTGCAGAAGAAACAATCTATAACAGGGGTTTCGTCCCCATCATGA 3675 0.4182 MARGRRIRARLRRSNLYTFGCLRPNISEEVPHPLQGPGYSRTVYCNQPQVHEKRSLFYCKNNISTTKYNAIMFFPKALFEQFRRVANIYFLLAACLSASPISPFSALSMIAPLVFVVGLSMAKEALEDSRRFLQDVKVNRRKASLHRGNGIFGLRSWQKIMVGDIVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATLTLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYDRQVYPLDPGHILLRDSKLRNTEYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTKYQATEWWYLRPDDIEYQYDPAKIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINQDLQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDLDEEDSDLSNFPMQKKGNAPWENVRRDEEIELETVVNSKGGEDQRPSIKGFGFVDSRLMNGNWSKDPNADVILLFFRILAVCHTAIPELNEENDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSTVVVRERISASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKKYLDATSRHLNEYGEVGLRTLALAYRNLDEQEYSDWNDEFQKAKTTVGPDRDAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTANSDSVINDGIEVIKGDILTQITNASQLMKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLALAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRLNGQTADMAAVGTTMFTSIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLLLYGMLSPQYSKTAYQILVEVLAPAPIYWAATILVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSITGVSSPS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04482 1224 Gene3D - 591 724 IPR023299 GO:0000166
Trre12g04482 1224 FunFam Phospholipid-transporting ATPase 591 722 - -
Trre12g04482 1224 SFLD C1.7: P-type atpase like 405 932 - -
Trre12g04482 1224 SUPERFAMILY Calcium ATPase, transduction domain A 147 287 IPR008250 -
Trre12g04482 1224 SUPERFAMILY HAD-like 411 925 IPR036412 -
Trre12g04482 1224 FunFam Phospholipid-transporting ATPase 724 921 - -
Trre12g04482 1224 Gene3D - 113 289 - -
Trre12g04482 1224 NCBIfam phospholipid-translocating P-type ATPase 58 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre12g04482 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Trre12g04482 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1159 IPR032630 -
Trre12g04482 1224 Pfam Cation transport ATPase (P-type) 546 651 - -
Trre12g04482 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1151 IPR023298 -
Trre12g04482 1224 Coils Coil 449 469 - -
Trre12g04482 1224 SFLD p-type atpase 405 932 IPR044492 -
Trre12g04482 1224 Gene3D - 725 921 IPR023214 -
Trre12g04482 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1178 - -
Trre12g04482 1224 CDD P-type_ATPase_APLT_Dnf-like 61 1041 - -
Trre12g04482 1224 FunFam Phospholipid-transporting ATPase 119 289 - -
Trre12g04482 1224 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Trre12g04482 1224 NCBIfam HAD-IC family P-type ATPase 850 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre12g04482 1224 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Trre12g04482 1224 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Trre12g04482 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04482 Trre-Chr12 59160708 59166439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04482 1 1216 Primary Pumps ATPases AT1G17500 75.185 0.0 1914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04482 K01530 - gmx:100778710 2185.61