Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04478 ATGGGAAATCAGAAACAGAAGTGGACGGCGGAAGAAGAAGAAGCGTTACAAGTCGGCGTTCAAAGATACGGTGCCGGAAAATGGAAAAACATTCTCCGTGACCCTGAGCTTCAACCTAAACTCATTAGTCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTCCCTGGTCAAGCCTCTAATGCTAAAGGTAGTAGGGTAACTCTTAAGGCTAAACCATCTGTTCCTGTTAATGCTACTCCTTCTCCGGTCACCGTCAATGCTTCTCCTGCTACTCCTTCTCCTGCTACTACTCCAGCTCCACTCAATGTTTCTCCTGTACCTCAAACTACTCAATTTCAGACTCCTACTCGTTGCCCTCCGCAGAATGATGAAGATGCCAAAATTCCTCCAAAGTACAATTCAATGATATTTGAAGCTTTAACAACAATCAAAGATACCAACGGTTCTGACTTAAGTGCTATTGTTAGCTTCATTGAGCAAAAGCACAACCTTCCTCAAAATCCAAATTTCAGAAAGACGATAGGTTCAAAGTTAAGAAGGCTCGTCAGTCAAGGGAAACTCGAAAAGGTACAAAATGGTTACAAGATAAAGGATACTCCAATAGGAACAAAGCCAGCCGAAGACACAAAGCCACCTGCACCAAAAGAAGAAATGGATCCACCAGTGTCACCTAATACTTTGGCATATGATGAGGCAATGAGAGAAGCTGCCGAAACTGTAGCCATCAGAATTGCTGATGCGGAGCATAAGTCATTTTTGGCTGCTGCGGCAGTCAAGGAGGCAGAAAGATATGCAAAGTTTGATGAGGAAAACGATGCAATGTTAAAGTTTGCAGAAGAGCTTTTAGAAAAATGCAAGCTCGGTGGAAATGTTCGCTTTGCATAA 900 0.4267 MGNQKQKWTAEEEEALQVGVQRYGAGKWKNILRDPELQPKLISRSNIDLKDKWRNLNVFPGQASNAKGSRVTLKAKPSVPVNATPSPVTVNASPATPSPATTPAPLNVSPVPQTTQFQTPTRCPPQNDEDAKIPPKYNSMIFEALTTIKDTNGSDLSAIVSFIEQKHNLPQNPNFRKTIGSKLRRLVSQGKLEKVQNGYKIKDTPIGTKPAEDTKPPAPKEEMDPPVSPNTLAYDEAMREAAETVAIRIADAEHKSFLAAAAVKEAERYAKFDEENDAMLKFAEELLEKCKLGGNVRFA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04478 299 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre12g04478 299 CDD H15 135 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g04478 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre12g04478 299 SUPERFAMILY "Winged helix" DNA-binding domain 134 211 IPR036390 -
Trre12g04478 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Trre12g04478 299 Gene3D - 130 223 IPR036388 -
Trre12g04478 299 MobiDBLite consensus disorder prediction 206 220 - -
Trre12g04478 299 MobiDBLite consensus disorder prediction 63 134 - -
Trre12g04478 299 CDD SANT_TRF 6 57 - -
Trre12g04478 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 133 203 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g04478 299 MobiDBLite consensus disorder prediction 202 227 - -
Trre12g04478 299 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Trre12g04478 299 SMART h15plus2 130 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g04478 299 Pfam linker histone H1 and H5 family 135 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g04478 299 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Trre12g04478 299 Gene3D - 2 58 - -
Trre12g04478 299 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Trre12g04478 299 MobiDBLite consensus disorder prediction 82 97 - -
Trre12g04478 299 MobiDBLite consensus disorder prediction 107 125 - -
Trre12g04478 299 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04478 Trre-Chr12 59138473 59142360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04478 1 299 Single Myb Histone (SMH) Gene Family AT1G72740 44.371 8.19e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g04478 Linker_histone 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04478 K09422 - gmx:778177 264.233