Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04474 ATGGCGTTCCATACCCCCGATCACGAATCAGCTTCCGATTCCAATACCCCAACACGACTCTACAATCCCTACAAAGACCTCGAAGTACCTATTCGAAATCTCTACCAGCTCCCAACCTCACCCGAACACCTCTTCGTTGAAGAAGCTGTACGAAAACATCGTTCATGGGGAGAAAACCTCACTTTCTACACCGGCTGCGGCTACCTCGGCGGTGCAGTCGCCGGCGCCGGCGTAGGCTTCGTCGAAGGAGTTAAATCATTTGAGAAAGGAGATACTACGAAACTCAGAGTCAATCGGATTCTTAATTCCTCTGGACACGCCGGTCGGACGTGGGGTAACCGGATCGGAGTGATTGCATTGCTTTACGCCGGTATTGAGAGCGGGATCACGGCGGCGAGAGACACCGACGATGTGTTGAACAGTGTAGCGGCGGGTCTTGGGACCGGCGTGTTGTTTCGAGCGGCGAGAGGGGTTAGATCGGCTGCTATAGCGGGTGCTGTTGGTGGTGTTGTGGTTGGAGTTGCTGTTACGGCGAAGCAGGTGTTGAAACGCTATGTTCCTATATGA 567 0.5362 MAFHTPDHESASDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEHLFVEEAVRKHRSWGENLTFYTGCGYLGGAVAGAGVGFVEGVKSFEKGDTTKLRVNRILNSSGHAGRTWGNRIGVIALLYAGIESGITAARDTDDVLNSVAAGLGTGVLFRAARGVRSAAIAGAVGGVVVGVAVTAKQVLKRYVPI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04474 188 PANTHER TIM23 32 177 IPR045238 GO:0022857
Trre12g04474 188 Pfam Tim17/Tim22/Tim23/Pmp24 family 62 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04474 Trre-Chr12 59101362 59101928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04474 2 188 Chloroplast and Mitochondria Gene Families AT1G72750 68.947 1.21e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04474 K17794 - gmx:100813158 265.774