Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g04473 ATGGCTTCAAATGAAGAACAAGGGTCCTCCATTCTTATTGCCATTGATAAAGACAGCAATAGCAAACATGCTGTAAGATGGGCTGTTGATAACCTTTTGGACAAGAACTCATCATGTACCCTCATTCACGTTAGAACCAAGTCCCTACATTCAAGTGAATTTGATGCTGTTCCTAAACAAGGTCGTGCACCAACTGAAGAAGAATTGCATCAGCTTTTTCTTCCTTTCCGCGGATTTTGTGCTCGAAAAGGGATCATAGCAAAGGAGTTGGTTCTGCATGACCTTGATGTTTCAAGTGCACTAACTGATTACATCATCGACAACTCTTTCATCGATGTTGTTGTTGGTGCTCCCCGCTGGAATAACGCTTTTATAAGGAAATTTAAAGATGTAGATGTGCCAACAAGCTTAATCAAGTCTCTGCCAGAGACTTGCACAGTGCATATTATATCAAAAGGAAAAGTTCATAGTATTCAAGCAACAGCTCCTTCACAAACCATTACTATTTCTAGTCCACAGCCAAATTATTTGTCCAAAGAATTAAACAGAACATCATTATCACGGCGTTATAGCAATGATGGTGGATCCTTCAGTCAAAACAAAGATCCAAGAGTATCAAGATGTATGTCTCAAAGAGAGTTTTGTCCAAGGAGAACACTATCAGATGAAAGCCAAGATGCATTTTTATCTAGAAGCAGATCTACTAAAGTATCACCAACTAGCATGGAGACGAGTAGAATAACAAAGAAAAGTCGTTCGGCATCAGTCAGTAGAGAACTTGGTTTGGTGAAACAGAAGGACCATGAAGAATGGATCGGAGAAAATGCTAGACATGTTGAAGAGGCTGCATTGGATTTGGCAGATGCAGAATTGAAGACTGAGAAAGGAAAACAGGAAGAAGTAATAGCTGTGGATGAAGAAGTAGTAACATTGAATGTAATTGAACAAAATAAATATATATTTAAAAGATACAATATTGAAGAAATTGAAGTTGCAACAAATTACTTTGATATTGATGGCAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGTGTGCTTGATAACCATGTTGTTGCAGTTAAAGCCTTAAGACCAGACATAACTCAAGGGGAGAAACAATTTCATCAAGAGGTCCTTGTTCTAGGCTCGATTAGACATCCCAACATTGTAATACTTTTAGGCGCATGTCCGGAGTATGGATGCCTTGTATATGAGTACCTAGAGAACGGAAGCTTAGAAGATCGTCTTTTTCGAAAAGATAACACACCGCCAATTCCATGGAAGACTCGTTTCAAAATAGCATCAGAGATTGCCACAGGCCTTCTTTTCCTTCATCAGACAAAACCAGAACCGGTTGTACATCGCGATCTCAAGCCAGCAAACATTCTGTTAGACAGAAACAAAGTCAGCAAGATCACCGATGTTGGTTTGGCAAGGCTTGTTCCGCCTTCTATCGCCAACAAAACCACTCAATATCACTTGACAGCTGCAGCCGGCACATTCTGCTATATTGATCCGGAGTATCAACAAACGGGACTATTAGGCGTAAAATCAGATATATATTCATTAGGTGTGATGCTGTTACAGATCATTACCGGAAAGCCTCCGATTGGCGTGGCTCATCTTGTTGAGGAGGCCATTCAGAATGATACTTTTGCAGAGGTTTTAGATCCGAGTGTGACCGATTGGCCGGTTGAAGAAGCTTTATCGTTTGCTAAATTGGCTTTGAAGTGTTGTGAGATGAGAAAAAAGGATAGACCAAATCTTGCTACTGTCATTTTGCCAGAATTGATTAGACTGAGAGATCTATAA 1818 0.3988 MASNEEQGSSILIAIDKDSNSKHAVRWAVDNLLDKNSSCTLIHVRTKSLHSSEFDAVPKQGRAPTEEELHQLFLPFRGFCARKGIIAKELVLHDLDVSSALTDYIIDNSFIDVVVGAPRWNNAFIRKFKDVDVPTSLIKSLPETCTVHIISKGKVHSIQATAPSQTITISSPQPNYLSKELNRTSLSRRYSNDGGSFSQNKDPRVSRCMSQREFCPRRTLSDESQDAFLSRSRSTKVSPTSMETSRITKKSRSASVSRELGLVKQKDHEEWIGENARHVEEAALDLADAELKTEKGKQEEVIAVDEEVVTLNVIEQNKYIFKRYNIEEIEVATNYFDIDGKIGEGGYGPVFKGVLDNHVVAVKALRPDITQGEKQFHQEVLVLGSIRHPNIVILLGACPEYGCLVYEYLENGSLEDRLFRKDNTPPIPWKTRFKIASEIATGLLFLHQTKPEPVVHRDLKPANILLDRNKVSKITDVGLARLVPPSIANKTTQYHLTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVAHLVEEAIQNDTFAEVLDPSVTDWPVEEALSFAKLALKCCEMRKKDRPNLATVILPELIRLRDL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g04473 605 Gene3D Transferase(Phosphotransferase) domain 1 409 604 - -
Trre12g04473 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 119 - -
Trre12g04473 605 Pfam Protein kinase domain 338 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04473 605 CDD STK_N 10 153 - -
Trre12g04473 605 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 308 408 - -
Trre12g04473 605 FunFam Os07g0541700 protein 409 499 - -
Trre12g04473 605 SUPERFAMILY Protein kinase-like (PK-like) 316 595 IPR011009 -
Trre12g04473 605 Pfam Universal stress protein family 11 122 IPR006016 -
Trre12g04473 605 SMART serkin_6 336 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04473 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Trre12g04473 605 MobiDBLite consensus disorder prediction 188 205 - -
Trre12g04473 605 PANTHER OS02G0152300 PROTEIN 11 604 - -
Trre12g04473 605 MobiDBLite consensus disorder prediction 188 210 - -
Trre12g04473 605 ProSiteProfiles Protein kinase domain profile. 336 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g04473 605 Gene3D HUPs 8 128 IPR014729 -
Trre12g04473 605 MobiDBLite consensus disorder prediction 225 251 - -
Trre12g04473 605 Gene3D Phosphorylase Kinase; domain 1 314 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g04473 Trre-Chr12 59092537 59095372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g04473 89 605 Receptor kinase-like Gene Family AT5G12000 47.126 1.72e-170 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre12g04473 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g04473 - - gmx:100814365 749.199